LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi03g0957	ATGGCAATGTCAACCGTAGCTAATTCAAACAACAAGCCTAGAAAGAAGTCATCATCCAGAGGCCACCATCGATTCGTCGGCGTCAGGCAACGGCCATCAGGACGGTGGGTGGCTGAAATCAAAGACTCCGTTCAAAAAGTCCGTCTATGGCTCGGGACATTCGACACGGCCGAGGATGCGGCTCGAGCCTATGACTCTGCCGCACGTGCCCTACGTGGCGCCAACGCTCGCACCAACTTCGACTTGCCGGACCCCACCGCCTCCGGTGGTAGCGCCGCCCAACACGGTGGCTGCGGGAGTTTCAGCTACATGCCGGAGAATCTCGAGCCGTTCTCGTTTGAGGACACGTGTGCAGGATCAGATGACCATCATGACCTCCTAGGAGCCCTCAAGGCCAAGTTGTTTGATGACAAAGGAGAAGTAAAGAAGCTTCCTTCTCAATTATCAAATAATAGCCAAATCTTGGCAGGATTTGTAAACCCTAATAAAATTAATAATCTAGGGTTTGCAAGCACTTCTTCATCAAGCACAAGCATGAGTTCTAAGAGCACTCACACCAATAATAATAATAGTAGTAATATGCTGATCTCATCAGATCAAGATCAAGGAGTTTCTATAGTAGCTGCAAATAGCAATCCTTCAGTAGTGCCATTAATGACGTCATCGTGGTCCAATAACTATGAATTGCCTTGGCCTACAGGTTCACAGATGATGATGAACCAGGTTCTTGAAAATAATAATAGCTTGTTATTTGCATCTTCAAGTAATTCTCCATTATGGCCATCAGTATCTACGATGAATAATATGATGTACTCATCAGATGATGTCAACATTATTAACGTTGACCAGAGAGAACACGGTTCTGAAGATAAATCAGTGTTATTAGGACATTCTGATTGTTATGATAATAACCAAGACATGATTATGTATTCTGATCATCATGGGGCTTCAACTAGCAGAAGTAATATTGCTCAAATTGGAGGACTGCCTCAAGGGGTTTGGACAACTGATCATCATTATCAACAGCAGCAGCAGCAGGTCCTTGTGCAGAGTGACCATAATAATGGAGGTTGGTTTAGTTCGAATAATAATAATGGTACGTGGGATCCTTTGCTTTTTGTGTCGTCTGAATTAGGTTGA	1140	0.443	MAMSTVANSNNKPRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSVQKVRLWLGTFDTAEDAARAYDSAARALRGANARTNFDLPDPTASGGSAAQHGGCGSFSYMPENLEPFSFEDTCAGSDDHHDLLGALKAKLFDDKGEVKKLPSQLSNNSQILAGFVNPNKINNLGFASTSSSSTSMSSKSTHTNNNNSSNMLISSDQDQGVSIVAANSNPSVVPLMTSSWSNNYELPWPTGSQMMMNQVLENNNSLLFASSSNSPLWPSVSTMNNMMYSSDDVNIINVDQREHGSEDKSVLLGHSDCYDNNQDMIMYSDHHGASTSRSNIAQIGGLPQGVWTTDHHYQQQQQQVLVQSDHNNGGWFSSNNNNGTWDPLLFVSSELG	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi03g0957	379	FunFam	ethylene-responsive transcription factor RAP2-11	23	82	-	-
	Mibi03g0957	379	SUPERFAMILY	DNA-binding domain	25	81	IPR016177	GO:0003677
	Mibi03g0957	379	ProSiteProfiles	AP2/ERF domain profile.	24	81	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0957	379	CDD	AP2	24	81	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0957	379	MobiDBLite	consensus disorder prediction	1	28	-	-
	Mibi03g0957	379	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	19	240	-	-
	Mibi03g0957	379	SMART	rav1_2	24	87	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0957	379	MobiDBLite	consensus disorder prediction	170	193	-	-
	Mibi03g0957	379	Pfam	AP2 domain	24	73	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0957	379	PRINTS	Ethylene responsive element binding protein signature	47	63	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0957	379	PRINTS	Ethylene responsive element binding protein signature	25	36	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0957	379	Gene3D	AP2/ERF domain	23	82	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi03g0957	Mibi-ChrMibi03	19198915	19200054	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi03g0957	12	80	AP2-EREBP Transcription Factor Family	AT5G19790	68.571	1.13e-27	107

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi03g0957		AP2	2.2e-13	CL0081