Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0948 ATGACAAAGGCTGTGCGCAGTAGGATACTGAAGGATGCGAATGGTGGTGATATTAGTGATCATTTACGAAACCACATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCATAAGAACAGCCCAATTCTTGCTGATAGGTCTCTAATGAGGGACCTAGTTGTGTTACAAAGGTCACGTTCTTTGAGAGACCCTTCAGCAAGCCCTCCTTCATGGCATTCTCCTTCAATAATTGAGGTGCTTTCTAAGAGGGTTGATGATGATGTGGTGGTTCAGGAGGGAAGGAGGTCTGTAGGAATTGAACGCCGGAAAGAAGGAAGGCGGTTGTCTGGAACTTCACCGCCTGTTGTTTGTTTAGGTCCATCGAAAGTTGCTCCGGGTGAGGAGAGCCGGGGTTATGATGGAGGAGGGTCGGTGAGTAGAGACCGGAGTAGCAGGAGTGGAATTGGAGATGGGAGGAAGGTTGGAAGAGAAGAGTCTGGTAGGAAGAGTGAGAGGCCGGATTATATGGGTTTCAGTGAAGAGCAACTTCATAGTCAACTTGGTAAAGATTTGGCTGAGGAAGTTGTTTCAAGGCATTCTGAATCGAAAGAGAGAAAGAGCAAACAAAGGGGGAAACATCGTCATGATGTTCAGGCTAAGACCCTTTCTGAGCAGCTGAATGATGTTCCACTGGATAGTGATGATTTGGCATCTTCAAACAATAATGTTCACAGAAGGTTTCCAAGACAGCAGAAAATTACTGAGGCTCCAGAAGCCAGCACACGGGGTCATGGAAACGGAGTGAATAGGGGGAAAAGGCGTAAGTTTCGAAGTGCAAGAAGAGCTAGAGCTTCTGTGGCATCTAATAAAGATGCTGGAGCTGAGAATGAACTGTCTGTTGCTTCTAACTCATTTGCTCATGGTTCAGCCCATCATAAATATCACATGGAAGAAGCAGATGAGTATGGAGAAGAAAATGTCACCAGGGCACCCAAAAATGGGTGTGGCATTCCTTGGAATTGGTCAAGAATTCATCACAGAGGTAAAACATTCCTTGACATGGCTGGACGAAGTTTATCTTGTGGTTTATCTGACCCAAGATTGAATAAAGGGGCATTGGGTGCCAATGGAAGAAACATTTCTGACATGCCGGTAGCATCTGATCAATCAAGCTCATTTACAAGGTCCGATGGAGAGGCAATGCCGCTACTAGTTGACGCATCTGGATCTCAGGGAAGTACTGAGAATGCTTGTTGGGGGCATGACTATTCTGGGGAGCTTGGTATTTTTGCTGATAATTTATTGAAGCGTGACATCGATTCTGACCTTGCTTCTGAAGCTAGATCTGGGGATCAGCATAAGATGAGAGTGAATCGCCATGGAAGGCATCAAAGCTTAACACAAAAGTATATGCCACGAACCTTCAGAGATTTAGTTGGGCAGAATTTGGTGGCACAAGCTCTTTCAAATGCAGTCATGAGAAGAAAAATTGGATTTATGTATGTGTTTTATGGACCCCATGGCACTGGAAAAACTTCCTGTGCTCGGATATTTGCTAGAGCTTTAAATTGTCATTCTTCTGAACACCCAAAACCATGTGGCTTTTGCAATTCTTGTGTAGCACATGATATGGGCAAGAACAGAAATATAAGGGAAATTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGACAACATGATTGTTTCCCAGCTTGCATCACAATATAGAGTGTTTATTTTTGATGATTGTGATACTCTGTCAGCTGAATGCTGGAGTGCCATATCGAAGGTCATTGATCGAGCTCCTAGACGTGTGGTTTTTATTCTTGTTAGTTCGTCTCTTGATGGATTGCCTCATATAATCATATCCAGGTGTCAGAAATTTTTCTTCCCAAAGCTGAAGGATTCAGACATTATGCATACATTACAGAGGATTGCAACCAAAGAGGGTCTAGAAATTGATAGGGATGCCTTGAAACTTATCGTATCAAGGTCAGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAGCTTAGCTTGCTTGGGCAGAGAATATCGGTTCCTCTTGTCCAGGAATTAGTTGGGCTTATCTCTGATGAGAAATTGGTTGATCTGCTTGATTTGGCACTATCTGCAGACACTGTCAACACAGTGAAGAATTTGAGGGTGATAATGGAAACTGGTGTTGAGCCGTTAGCCTTGATGTCGCAGCTTGCTACTGTAATTACTGACATACTAGCTGGGACCTATGATTTCACAAGAGAAAGGAGGAGAAGGAAGTTTTTCCGGAGACATCCATTATTGAAAGAAGATATGGAAAAGCTACGCCAAGCTTTGAAAACTTTGTCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGATAAGCTGACCTGGCTAACAGCTGCATTGCTTCAACTTGCTCCCGACCAGCAATATATGCTGCCTACATCATCTGATAACAGTTTCAATCACAGTCCCTTGCCCCTAAGTAATGCAGGTGGGAGAGAGGCACCTCGACGAATGAGCACTAGTGTTGAAATTCCTCGCAAAGAGAGGCGTTTATCAATGGACGCTAGAATGGAGAATATCCATGCTTGTAGTCCTGTTGATAGTATGTCAAAGGGTCTAAGTTCAGATAATAAAAGACTTGCTGTGGCTGGTTTTGTGCCTCAACATGCTAGACAGACTCCGGGTAGAAACCGCAGAGGAATTGAAGAGATATGGTTAGAAGTGCTTGACCGAATTCAGGTTAATGGTCTAAAAGAGTTTTTATATAGAGAGGGGAAGCTGGTCTCTGTTAGTTTTGGTGCAGCTCCAACTGTGCAGTTATTGACTAGTTCACAACAGACCAAATCTACTACTGAGAAGTTCAGGGGGCATATTTTACAGGCATTTGAATCTGTCCTTGGATCGCCTGTAACGTTAGAGATTAGATGTGAACCAAACAGAGATGCAGGATCAGGGTCTCAACTCCCTCTTATACTGCCTGCCAACAAAGATAGTTGTTCTGTAGAAAAGAAAATGAGTGAAATTGTAGAAGAAGAAGCAGCTTCTCCGAGGGACCATAAGAATAATGAGCAGCAGGTTGATGCTAACAAAAAGCCTATTGTGACTTCACAGTTAGAAAGAAGGAGGCTTAGAGAACAAGGTCAGAGCCGAAGCATCGTGAAAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGACATTCACAGCGTAGTGGGTGGTCAAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAGCCACGATCAAGGAGCTTGCTATGCTGGAAAGGATCACGAGTAACACGGCGGAAGCTTTCACGTTTGAAAGTTAGAACCAGAAAACCTCATGCGTTGCTGAATCTGGTCTCATGTGGAAAATGTCTCTCTTCTAAATCTCCAAGGTAG 3444 0.4361 MTKAVRSRILKDANGGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPPSWHSPSIIEVLSKRVDDDVVVQEGRRSVGIERRKEGRRLSGTSPPVVCLGPSKVAPGEESRGYDGGGSVSRDRSSRSGIGDGRKVGREESGRKSERPDYMGFSEEQLHSQLGKDLAEEVVSRHSESKERKSKQRGKHRHDVQAKTLSEQLNDVPLDSDDLASSNNNVHRRFPRQQKITEAPEASTRGHGNGVNRGKRRKFRSARRARASVASNKDAGAENELSVASNSFAHGSAHHKYHMEEADEYGEENVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDPRLNKGALGANGRNISDMPVASDQSSSFTRSDGEAMPLLVDASGSQGSTENACWGHDYSGELGIFADNLLKRDIDSDLASEARSGDQHKMRVNRHGRHQSLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKIGFMYVFYGPHGTGKTSCARIFARALNCHSSEHPKPCGFCNSCVAHDMGKNRNIREIGPVSNFDFESIMDLLDNMIVSQLASQYRVFIFDDCDTLSAECWSAISKVIDRAPRRVVFILVSSSLDGLPHIIISRCQKFFFPKLKDSDIMHTLQRIATKEGLEIDRDALKLIVSRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTRERRRRKFFRRHPLLKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTSSDNSFNHSPLPLSNAGGREAPRRMSTSVEIPRKERRLSMDARMENIHACSPVDSMSKGLSSDNKRLAVAGFVPQHARQTPGRNRRGIEEIWLEVLDRIQVNGLKEFLYREGKLVSVSFGAAPTVQLLTSSQQTKSTTEKFRGHILQAFESVLGSPVTLEIRCEPNRDAGSGSQLPLILPANKDSCSVEKKMSEIVEEEAASPRDHKNNEQQVDANKKPIVTSQLERRRLREQGQSRSIVKSKVSLAHVIQQAEGHSQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKGSRVTRRKLSRLKVRTRKPHALLNLVSCGKCLSSKSPR 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0948 1147 Pfam DNA polymerase III, delta subunit 476 633 - -
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 819 847 - -
Mibi03g0948 1147 Coils Coil 766 796 - -
Mibi03g0948 1147 SUPERFAMILY post-AAA+ oligomerization domain-like 704 807 IPR008921 GO:0003677|GO:0006260
Mibi03g0948 1147 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 462 860 - -
Mibi03g0948 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 680 IPR027417 -
Mibi03g0948 1147 Gene3D - 450 630 IPR027417 -
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 103 291 - -
Mibi03g0948 1147 Pfam DNA polymerase III subunits gamma and tau domain III 689 748 IPR022754 GO:0003887
Mibi03g0948 1147 CDD HLD_clamp_pol_III_gamma_tau 633 696 IPR045085 -
Mibi03g0948 1147 SMART AAA_5 492 633 IPR003593 -
Mibi03g0948 1147 FunFam DNA polymerase III subunit gamma/tau 634 696 - -
Mibi03g0948 1147 Gene3D - 634 696 - -
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 147 173 - -
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 217 242 - -
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 369 391 - -
Mibi03g0948 1147 FunFam DNA polymerase III subunit gamma/tau 454 632 - -
Mibi03g0948 1147 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 459 807 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 181 199 - -
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 1012 1040 - -
Mibi03g0948 1147 CDD AAA 474 633 - -
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 262 276 - -
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 377 391 - -
Mibi03g0948 1147 MobiDBLite consensus disorder prediction 1012 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0948 Mibi-ChrMibi03 18872391 18879242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0948 459 745 Core DNA Replication Machinery Family AT1G21690 23.611 1.12e-13 72.0