Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0940 ATGGCTTCTGGTGCTATTTTCTCGTCGTTACGGCGAAGAAGGTCGCCGACGTTGGAGGCGTTTCTTGCTCCGGTTGACTTATCCGATGTAGCTCTTGTTCAAACCCTAGTTTCTGTGGCTAGTGACCTTGTAAATTCCATTTCTGGACGATCTTTCTTCTTCCAGCGTAAGAATTCGCGGTCTCTTGTTCGAAAGGTGGAGGTGTTTCGGTTGCTTTTGGAGTATTTGATGGACAGTGGCGCGTGTATTCCACCGACGGCTGTTCTTTGTTTGAAGGAACTTTATTTGCTGTTGTACCGGTCGAAGATTCTTCTTGACTATTGTGGTCAATCGAGTAAGTTATGGCTTTTGCTTCAGAATCATTCGATTTCTGGCCATTTTCATGATTTAAACCAGGAAGTATCGACCATTCTGGATGTGTTTCCTATTGATGATGTTGGATTGAGTGAGGATGTTAGGGAATTGGTTGAGTTGTTGAGAAAACAGTCGAGGGATGCTAAGTTGTTCATTGACCAGAAAGATGATGATCTCAGGATTCGCTTCTTGTCGTTTCTTGATGATTTTGAAAATGGGAGAATCCCTGATTCTTCGGAGTTGAGGGTTTTGTTTGTGGAGAAATTGAAGATTCTGGATGCTGGAAGTTGCAGAAGTGAAATTGAGTCTTTGGAGGAGCAGATTGTGCACCATGAGGGAGATGTTGAGCCGACAATTTCTGTGCTTAATGGGCTTGTTGCTTTGACACGGTATTGCAGGTTTTTGCTTTTTGGATTTGAGGAAGATGAGCGAGAGTTTAGCAGTGGAAATAAGAAAAAGCCCAAACGGGGTTTGATTAGTCAAGAAATTGCCGGAACGTTTATAAGTATTCCCAAGGACTTTTGTTGTCCAATAACATTGGATCTTATGTGTGACCCGGTTATAATTTCCACAGGACAGACATATGATCGAAGTTCCATATCCCGGTGGATAGAGGATGGACACTGCACTTGTCCAAAAACTGGGCAAATGCTTAGTAGCACACGCCTTGTTCCTAACCGATCTCTTAGGAATTTGATCATGCAATGGTGCACTGCTCATGGAATTCCATATGATACACCGGAGGTCATGGACCCTTCAGTTGAAATTTTCGCATCAACTTCTCCTACCAAGGCTGCCCTTGAAGCCAACAGAGCAACAGCATCACTTCTCATTCAGCAGCTTGCAAATGGGTCACAAGTTGCAAAGACTGTAGCTGCTCGGGAGATTCGATTGCTGGCGAAAACAGGAAAAGAAAATCGGGCCTTCATCGCAGAATCCGGGGCTATTCCTCATCTTCAAAAGCTACTCTCCTCTCCTAACGCCGTTGCCCAGGAGAATTCTGTAACTGCATTGCTCAACCTATCAATTTATGAGAAGAACAAAAGTCGGATAATGGATGAGGAAGGATGTCTGGCATCAATAGTTGACGTGTTGAGATTTGGGCAAACAACAGAGGCAAGGGAAAATGCTGCCGCAACGTTGTTCAGTCTCTCTGCTGTCCATGACTACAAGAAGAGAATTGCAGATAAGGTGGGAGCTGTGGAAGCCCTGGCTTATTTGTTGCAAGAGGGGACGCCAAGAGGGAAGAAGGATGCTGTGACAGCTTTGTTTAATCTTTCCACCCACACTGAGAATTGTGCTAGGATGATTGAAGCAGGGGCTGTGACAGCTTTAGTTGTGGCTTTGAGAAATGAAGGAGTTGCTGAGGAAGCAGCCGGTTCGTTGGCCTTGATTGTGCGGCAGCCTATTGGGGCAAAGGCTGTGGTTAATGAGGAAGCAGCTGTAGCTGGATTAATCGGAATGATGCGATGTGGGACGCCAAGAGGTAAAGAGAATGCGGTTGCAGCCTTGCTTGAGTTGTGCCGCAGCGGTGGCTCGGCTGCAACTGAAAGGGTGATTAGGGCACCAGCTTTGGCAGGATTGCTTCAAACCCTGCTTTTCACTGGGACAAAGCGGGCAAGAAGAAAAGCAGCTTCACTGGCTAGGGTGTTTCAGAGATGTGAAAATGCACATCTGCATTATGGTGGTTTAGGTGTAGGGTATGCATACGCTAGCAATTCAGCTGCAGACAGGGATACAAGCTTTGCCGGTGATGTGTCAGTACCAATGTCCATTTCTGTACCTGTTGTGTAG 2148 0.459 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVSVASDLVNSISGRSFFFQRKNSRSLVRKVEVFRLLLEYLMDSGACIPPTAVLCLKELYLLLYRSKILLDYCGQSSKLWLLLQNHSISGHFHDLNQEVSTILDVFPIDDVGLSEDVRELVELLRKQSRDAKLFIDQKDDDLRIRFLSFLDDFENGRIPDSSELRVLFVEKLKILDAGSCRSEIESLEEQIVHHEGDVEPTISVLNGLVALTRYCRFLLFGFEEDEREFSSGNKKKPKRGLISQEIAGTFISIPKDFCCPITLDLMCDPVIISTGQTYDRSSISRWIEDGHCTCPKTGQMLSSTRLVPNRSLRNLIMQWCTAHGIPYDTPEVMDPSVEIFASTSPTKAALEANRATASLLIQQLANGSQVAKTVAAREIRLLAKTGKENRAFIAESGAIPHLQKLLSSPNAVAQENSVTALLNLSIYEKNKSRIMDEEGCLASIVDVLRFGQTTEARENAAATLFSLSAVHDYKKRIADKVGAVEALAYLLQEGTPRGKKDAVTALFNLSTHTENCARMIEAGAVTALVVALRNEGVAEEAAGSLALIVRQPIGAKAVVNEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVIRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENAHLHYGGLGVGYAYASNSAADRDTSFAGDVSVPMSISVPVV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0940 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 363 IPR013083 -
Mibi03g0940 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Mibi03g0940 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Mibi03g0940 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Mibi03g0940 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Mibi03g0940 715 SUPERFAMILY RING/U-box 276 362 - -
Mibi03g0940 715 SMART arm_5 547 585 IPR000225 GO:0005515
Mibi03g0940 715 SMART arm_5 586 627 IPR000225 GO:0005515
Mibi03g0940 715 SMART arm_5 421 461 IPR000225 GO:0005515
Mibi03g0940 715 SMART arm_5 506 546 IPR000225 GO:0005515
Mibi03g0940 715 SMART arm_5 462 504 IPR000225 GO:0005515
Mibi03g0940 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Mibi03g0940 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Mibi03g0940 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Mibi03g0940 715 PANTHER U BOX DOMAIN-CONTAINING 56 672 - -
Mibi03g0940 715 Gene3D - 488 672 IPR011989 -
Mibi03g0940 715 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Mibi03g0940 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Mibi03g0940 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Mibi03g0940 715 Gene3D - 371 486 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0940 Mibi-ChrMibi03 18765604 18767751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0940 1 714 U-box Gene Family AT1G29340 69.494 0.0 961