Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0890 ATGGCTTTCTCAAATGACAACAAAAACAACAACAACAACAACAACAACAACAATCAGGCAGCCATGTCTGATTCATCATCTCCATCACAGAAAAAGATGGGAAGAGGGAAGATTGAGATTAAGAGGATAGAAAACACCACAAATCGCCAAGTCACTTTCTGTAAACGCAGAAATGGCCTCCTCAAGAAAGCTTATGAGCTCTCTGTTCTTTGTGATGCTGAGGTTGCCCTCATAGTCTTCTCCACTCGTGGTCGCCTCTATGAATATGCCAATCACAGTGTGAAGGCAACAATAGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTTCTGGATCCACTTCTGAAGCTAATGTTCAGTATTATCAGCAAGAAGCTGCAAAACTGCGAGCTCAAATTAGTAGCCTGCGCAATAACAACATGCAAATGATGGGGGAGACATTGGCAGGTTTGAATGCCAGAGATCTCAAGAACTTGGAGGGTAAGTTAGAGAAAGGCATAAGCAAAATTCGTTCCAAAAAGAATGAGCTTCTGTTCGCAGAAGTTGAGTACATGCAGAAAAGGGAGGTAGACTTGCACAATAATAACCAGCTTCTTCGAGCTAAGATAGCTGAAAGTGAAAGCAACCAGCAGCAGCAGCAGCATAACATGAATGTGTTGCCAGGGGGATCAAACTATGAAGGAATGAATGAGTCATCATCAAATAATGAGAATCAATTTGACTCGAGAGCCTTCTTCCAAGTCACTGGTTTACAACCTACTCATCACTACACTCCCCAAGACCACATGTCCCTTCAATTAGTGTGA 807 0.4238 MAFSNDNKNNNNNNNNNNQAAMSDSSSPSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANHSVKATIERYKKACSDSSGSGSTSEANVQYYQQEAAKLRAQISSLRNNNMQMMGETLAGLNARDLKNLEGKLEKGISKIRSKKNELLFAEVEYMQKREVDLHNNNQLLRAKIAESESNQQQQQHNMNVLPGGSNYEGMNESSSNNENQFDSRAFFQVTGLQPTHHYTPQDHMSLQLV 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0890 268 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Mibi03g0890 268 Pfam K-box region 116 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi03g0890 268 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Mibi03g0890 268 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Mibi03g0890 268 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Mibi03g0890 268 MobiDBLite consensus disorder prediction 1 32 - -
Mibi03g0890 268 CDD MADS_MEF2_like 34 103 IPR033896 GO:0000977|GO:0045944
Mibi03g0890 268 MobiDBLite consensus disorder prediction 205 237 - -
Mibi03g0890 268 ProSitePatterns MADS-box domain signature. 35 89 IPR002100 GO:0003677|GO:0046983
Mibi03g0890 268 Gene3D - 45 111 IPR036879 GO:0003677|GO:0046983
Mibi03g0890 268 MobiDBLite consensus disorder prediction 1 39 - -
Mibi03g0890 268 Coils Coil 119 146 - -
Mibi03g0890 268 FunFam agamous-like MADS-box protein AGL11 45 128 - -
Mibi03g0890 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
Mibi03g0890 268 Coils Coil 156 176 - -
Mibi03g0890 268 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Mibi03g0890 268 ProSiteProfiles K-box domain profile. 119 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi03g0890 268 SUPERFAMILY SRF-like 34 105 IPR036879 GO:0003677|GO:0046983
Mibi03g0890 268 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0890 Mibi-ChrMibi03 16049148 16055704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0890 23 268 MADS-box Gene Family AT3G58780 62.602 5.60e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi03g0890 K-box 9.7e-25 No_clan