Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0881 ATGGGAATTCAGGGTCTTCTGCCCCAGTTGAAATCCATTATGGTACCAATCCACATCAAGCAATTTGAGGGTTGCTATGTAGCTGTCGACACATATTCTTGGCTCCACAAAGGTGCTTTATGTTGCAGTACCGAGCTTTGTAAGGGAATACCCACATCCAGACATATTGAGTATTGCATGCGAAAAGTAAATTTGCTGCGGCACTATGGTGTTAAGCCTATTCTTGTATTTGATGGAGGCCTTCTACCAATGAAGAGCGAACAAGAGAACAAGCGTGCAAGGGTGAGAAAGGAAAATCTTGCACGTGCTGTTGAACATGAGTCGCATGGAAATTCTTCTGCTGCTTTTGAGTGCTACCAGAAAGCTGTTGATATCTCACCTCTGGTTGCATGTGAACTAATTCAGGAGAATGTGAATTATGTTGTAGCTCCTTATGAGGCGGATGCCCAGATGACATTCTTGGCAGCCAGCAAGCAGGTTGAAGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGTCCAAGAATCATCTTTAAAATGGACAAGTTTGGTCAAGCTGTTGAGTATCAACATTCCATGCTACAAAAGAACAAAGACCTTAATTTTGAAGGGTTCACCCGCCAAATGCTTCTTGAAATGTGTATATTGAGTGGTTGTGACTATCTGCAGTCCTTGCCAGGTATGGGTCTCAAAAGGGCTCATTCAATTATCAAGAGGTTCAAAAGTTATGACAAGGCTCTTAAGAATTTGAGATTCAATGGAGTGTCCGTCCCTTCCTCTTATGAAGAATCATTCAAGAAGGCTATATTGACTTTTCAATATCAACGAGTTTATAATCCAATCGATGAAGATATTGTTCATTTGTCTGATGTACCAGCTGATATCGGTGATGACTTAGACTTCTTAGGACCATATCCTTTATCTTAA 933 0.4084 MGIQGLLPQLKSIMVPIHIKQFEGCYVAVDTYSWLHKGALCCSTELCKGIPTSRHIEYCMRKVNLLRHYGVKPILVFDGGLLPMKSEQENKRARVRKENLARAVEHESHGNSSAAFECYQKAVDISPLVACELIQENVNYVVAPYEADAQMTFLAASKQVEAVITEDSDLIPFGCPRIIFKMDKFGQAVEYQHSMLQKNKDLNFEGFTRQMLLEMCILSGCDYLQSLPGMGLKRAHSIIKRFKSYDKALKNLRFNGVSVPSSYEESFKKAILTFQYQRVYNPIDEDIVHLSDVPADIGDDLDFLGPYPLS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0881 310 CDD PIN_EXO1 1 198 IPR044752 GO:0046872
Mibi03g0881 310 Pfam XPG I-region 137 222 IPR006086 GO:0004518
Mibi03g0881 310 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 207 299 IPR036279 -
Mibi03g0881 310 SMART xpgn3 1 99 IPR006085 GO:0004518
Mibi03g0881 310 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mibi03g0881 310 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 133 150 IPR006084 -
Mibi03g0881 310 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 154 174 IPR006084 -
Mibi03g0881 310 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Mibi03g0881 310 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 212 227 IPR006084 -
Mibi03g0881 310 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Mibi03g0881 310 Gene3D - 205 277 - -
Mibi03g0881 310 Gene3D - 1 203 - -
Mibi03g0881 310 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Mibi03g0881 310 SMART xpgineu 134 204 IPR006086 GO:0004518
Mibi03g0881 310 FunFam Exonuclease 1, putative 1 203 - -
Mibi03g0881 310 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 295 IPR006084 -
Mibi03g0881 310 SUPERFAMILY PIN domain-like 2 222 IPR029060 -
Mibi03g0881 310 CDD H3TH_EXO1 210 281 IPR037315 GO:0003677|GO:0035312
Mibi03g0881 310 SMART HhH_4 209 242 IPR008918 GO:0003677|GO:0003824
Mibi03g0881 310 FunFam exonuclease 1 205 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0881 Mibi-ChrMibi03 15913949 15917312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0881 1 263 Core DNA Replication Machinery Family AT5G26680 25.714 1.02e-15 75.5