Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0856 ATGATGAGCAAAGGAAGTAAAGAGATAAAGAAGGAAGCTACCTCGTCTTCTTCTTCATTTTCAGCTTCACCAGCTGCGAATAACATGAAGATCATCGCTAGAACTTCTGATAAAGACAAAGCAATTGCACAGTACAGTGCTGATGCTGGGATTTTGGCTGAGTATGAACAATCTGGTGTGTCTGGGAAGTCGTTTGATTACTCAAAATCGGTTCTTGATGCTCCTAATTCTGTGTCTGATGAAAAAATGACTGCTTACTTGTTGAGAATTCAAAGGGGTGGTCTTGTTCAGCCATTCGGGTGTATGCTTGCAATTGAAGAACACACTTTTAGGATTATTGGGTATAGTGAGAATTGTTTTGAAATGTTGGGTTTAAATGGGAAATCTCATTCAGAACTATTTGTTAGTCTTCTTGGAGTTGATGCTATTACTCTATTCACTCCTTCTTCTGGGGCTTCCCTTGCAAAAGCTGCAGCTTCTAGGGAAATTTCGCTGCTAAATCCCATTTGGGTGTGTTCCAGATCAACCCAGAAGCCTTTTTATGCTATAATGCATCGGATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCAAGGTCTAGTGATCAAGCATTGTCATTTGCTGGAGCTGTACAGTCTCAGAAACTAGCTGTACGGGCAATTTCAAGGCTGCAATCTCTTCCTGCAGGAAATATTGGAGCTTTGTGTGATACTGTTGTTGAAGAAGTTCAAAAGCTCACTGGTTATGACAGGGTTATGGTTTATAAGTTCCATAAGGATGATCATGGGGAGGTTGTGTCTGAAATCAGAAGGTTTGATTTAGAACCCTTTCTGGGTTTGCATTACCCTGCCACTGATATCCCTCAGGCTGCTCGCTTTTTGTTCAAGCAGAATAGAGTCAGGATGATTTGCGATTGCCATGCAAAACCAGTTAAGGTGATTCAGATTGAAGAGTTAAGGCAGCCTCTTTGCTTGGTCAATTCTACCCTCAGGTCACCACATCAATGTCATGCTCAGTACATGGAAAACATGGGATCAATTGCTTCTCTGGTTATGGCTGTTATTGTAAATGGGAATGATGCTACAAAGCTATGGGGTTTGCTAGTTTGTCACCACACTTCGCCGCGTCATGTCCCTTTCCCACTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGATTGCAGCTTCACATGGAGATGCAATTGGCATCACAGATGGCAGAGAAGAGGACTCTTAAAACCCAAACCTTACTATGTGACATGCTTCTCCGTGATGTTCCTTATAGTATTGTTACACAATCTCCTAGCATAATGGATCTTGTGAAGTGTGATGGTGCTGCACTGCTTTTTGGTGGGAAATGTTGGCTGTTAGGCACAACCCCAACTGAATCACAGGTTAAAGACATTGCAGAATGGCTAGTTAGTAGTCATGGGGACTCAACTGGTTTGAGCACGGATAGTTTGGCTGATGCTGGTTACCCGGATGCTGCTTCACTGGGGGATGCAGTTTGTGGCATGGCAACAGCAAGAATCAATTCAAGAGATTTCTTGTTCTGGTTCAGGTCTCATGCTGCTAATGAAGTCAAGTGGGGTGGAGCTAAACACCACCCAGAGGATAAAGATGATGGAGGAAAAATGAACCCCAGACTTTCATTTAATGCATTTCTTGAAGTAGTAAAAAGGAAAAGTGTGCCTTGGGAAGCGTCAGAAATCAATGCTATTCACTCATTACAGCTTATAATGAGAGATTCATTCAAAGATGCAGAGAACTGTGGTCCTAAGGCTCTAACTCCTGTGAAGCAAGAGGAGGACACTAATATTGGCCGAAATGGGATAGAAGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTAATTGAAACAGCAACAGTTCCAATTTTTGGGGTTGATTCAGCTGGTATAATCAATGGATGGAATGCCAAAATCGCTGAACTGACGGGTCTGCAAATCAATGAAGCTATGGGACAATCCCTTGTAAATGAAATTGTTGTTGAGGATACACGGGAAACTGTTCATAATATTTTAAAAAGAGCCTTGGAAGGTCAGGAGGACAAAAATGTTGAGTTGAAGTTGAAGCACTTTGGTCCCCATCAGCAAAAATCGGTTGTCTATATTAAGGCCAATGCCTGCACAAGTAGGGATTACAAAAATGCTGTTGTTGGGGTCTGCTTTGTGGGTCAAGACATCACTCATGAGAAATCTGTTCTGGATAAATTTATCAAGGTGGAAGGTGATTACAAAGCTATCATACAGAGTCCCAACCCATTGATTCCACCCATATTTGCTTCAGATGAGAATGCATGTTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAGAGAGATGAAGTTTTTGGGAAAATGCTTCCTGGGGAGATCTTTGGAGGTTTATGTCGGTTAAAAAGTCATGATACACTTACCAGTTTCACAATTTTATTGTATCAAGGAATCAGCGGCCAAGATTCTGAGAAGTTCCCAATTAGCTTTCTTAATAGGAAGGAGGAACTTGTGGAGGTTTTCTTGACGGTGAACAAGAGGATTGATGCAACTGGTAGAATAATTGGCTGCTATTGTTTCTTGCAGATTGTAATGCCAGACCTGCATCGGCTTTCAGGAGAACAAAGGCCACAATCCGGGGGAAGGCTTTCTGATTTTAGGGAATTAGACTATATACTACAAGAGATTAAGAATCCTTTAAATGGTATGCGTTTCACACAAAAACTCCTGCAAAATACAGATGTCTCAGAAAATCAGAAACAATTTCTTGATACTAGCAATGCTTGTGAGAGACAAATTATGACACTTCTTGAGGATGCGGATTTTGATAGTATTGATGAAGGAACTTTGCAGCTCAAAATGGAGGAGTTCCTTCTTGGAAATATCCTAGATGCCATTGTCAGTCAAGTCATGATCATGGTAAGAGAAAGAAACTTGGGGCTCTTTCATGAAATTCCTGATGAAATCAAAACACTTGCTCTATTCGGTGATCAAATAAGGCTACAATTGGTCTTATCTGATATTTTGATTAATGTGGTCTGCCACACACCATCTCCCAATGGCTGGGTAGAAATAAAGATTTCACCTGGGTTGAAGATAATACAGGATGGAAGTGAGTTTATTCATCTGCAGTTCAGAATGACCCATGCTGGTGAAGGTCTTCCTTCTGAAATTCTTCAGGAAATGTTTGAAGGTGGGAATAAATGGACTACGCAGGAAGGTTTAGGGCTATACATGTCAAGAAAAATCCTCATTAAGATGAATGGTCATGTCCAATATGTAAGAGAACAAAACAAGTGTTACTTTCTCATTGATATTCAACTTAGAACAAGAGAAGAAAGGCAGAGGATTTTTCAAGCATTAGAGACGAGCATGATATCTTAG 3414 0.4112 MMSKGSKEIKKEATSSSSSFSASPAANNMKIIARTSDKDKAIAQYSADAGILAEYEQSGVSGKSFDYSKSVLDAPNSVSDEKMTAYLLRIQRGGLVQPFGCMLAIEEHTFRIIGYSENCFEMLGLNGKSHSELFVSLLGVDAITLFTPSSGASLAKAAASREISLLNPIWVCSRSTQKPFYAIMHRIDVGIVIDLEPARSSDQALSFAGAVQSQKLAVRAISRLQSLPAGNIGALCDTVVEEVQKLTGYDRVMVYKFHKDDHGEVVSEIRRFDLEPFLGLHYPATDIPQAARFLFKQNRVRMICDCHAKPVKVIQIEELRQPLCLVNSTLRSPHQCHAQYMENMGSIASLVMAVIVNGNDATKLWGLLVCHHTSPRHVPFPLRYACEFLMQAFGLQLHMEMQLASQMAEKRTLKTQTLLCDMLLRDVPYSIVTQSPSIMDLVKCDGAALLFGGKCWLLGTTPTESQVKDIAEWLVSSHGDSTGLSTDSLADAGYPDAASLGDAVCGMATARINSRDFLFWFRSHAANEVKWGGAKHHPEDKDDGGKMNPRLSFNAFLEVVKRKSVPWEASEINAIHSLQLIMRDSFKDAENCGPKALTPVKQEEDTNIGRNGIEELSSVAFEMVRLIETATVPIFGVDSAGIINGWNAKIAELTGLQINEAMGQSLVNEIVVEDTRETVHNILKRALEGQEDKNVELKLKHFGPHQQKSVVYIKANACTSRDYKNAVVGVCFVGQDITHEKSVLDKFIKVEGDYKAIIQSPNPLIPPIFASDENACCSEWNAAMERLTGWKRDEVFGKMLPGEIFGGLCRLKSHDTLTSFTILLYQGISGQDSEKFPISFLNRKEELVEVFLTVNKRIDATGRIIGCYCFLQIVMPDLHRLSGEQRPQSGGRLSDFRELDYILQEIKNPLNGMRFTQKLLQNTDVSENQKQFLDTSNACERQIMTLLEDADFDSIDEGTLQLKMEEFLLGNILDAIVSQVMIMVRERNLGLFHEIPDEIKTLALFGDQIRLQLVLSDILINVVCHTPSPNGWVEIKISPGLKIIQDGSEFIHLQFRMTHAGEGLPSEILQEMFEGGNKWTTQEGLGLYMSRKILIKMNGHVQYVREQNKCYFLIDIQLRTREERQRIFQALETSMIS 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0856 1137 Gene3D PAS domain 766 875 - -
Mibi03g0856 1137 SMART pas_2 621 688 IPR000014 -
Mibi03g0856 1137 SMART pas_2 752 822 IPR000014 -
Mibi03g0856 1137 CDD PAS 630 737 IPR000014 -
Mibi03g0856 1137 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 231 391 IPR016132 -
Mibi03g0856 1137 PANTHER OS08G0260000 PROTEIN 82 955 - -
Mibi03g0856 1137 FunFam Phytochrome 615 747 - -
Mibi03g0856 1137 MobiDBLite consensus disorder prediction 1 24 - -
Mibi03g0856 1137 Pfam PAS fold 85 198 IPR013654 GO:0006355
Mibi03g0856 1137 PRINTS Phytochrome signature 735 755 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 PRINTS Phytochrome signature 622 638 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 PRINTS Phytochrome signature 331 352 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 PRINTS Phytochrome signature 641 656 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 PRINTS Phytochrome signature 146 168 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 PRINTS Phytochrome signature 246 265 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 PRINTS Phytochrome signature 715 732 IPR001294 GO:0006355|GO:0009584
Mibi03g0856 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 625 733 IPR035965 -
Mibi03g0856 1137 Gene3D - 406 579 IPR043150 -
Mibi03g0856 1137 TIGRFAM sensory_box: PAS domain S-box protein 626 741 IPR000014 -
Mibi03g0856 1137 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 962 1109 IPR036890 -
Mibi03g0856 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 767 871 IPR035965 -
Mibi03g0856 1137 ProSitePatterns Phytochrome chromophore attachment site signature. 331 340 IPR013516 -
Mibi03g0856 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 90 200 IPR035965 -
Mibi03g0856 1137 ProSiteProfiles PAS repeat profile. 619 690 IPR000014 -
Mibi03g0856 1137 CDD HATPase_Phy-like 1005 1118 IPR044767 -
Mibi03g0856 1137 FunFam Phytochrome 766 874 - -
Mibi03g0856 1137 Gene3D PAS domain 621 742 - -
Mibi03g0856 1137 Gene3D PAS domain 90 334 - -
Mibi03g0856 1137 SUPERFAMILY GAF domain-like 211 398 - -
Mibi03g0856 1137 FunFam Phytochrome 406 535 - -
Mibi03g0856 1137 ProSiteProfiles PAS repeat profile. 750 805 IPR000014 -
Mibi03g0856 1137 SMART HKATPase_4 1006 1120 IPR003594 -
Mibi03g0856 1137 PIRSF Phytochrome_conventional 15 1127 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Mibi03g0856 1137 Gene3D - 936 1112 IPR036890 -
Mibi03g0856 1137 SMART HisKA_10 895 958 IPR003661 GO:0000155|GO:0007165
Mibi03g0856 1137 Pfam His Kinase A (phospho-acceptor) domain 899 958 IPR003661 GO:0000155|GO:0007165
Mibi03g0856 1137 CDD PAS 764 872 IPR000014 -
Mibi03g0856 1137 ProSiteProfiles Histidine kinase domain profile. 901 1120 IPR005467 -
Mibi03g0856 1137 Pfam GAF domain 232 400 IPR003018 GO:0005515
Mibi03g0856 1137 Coils Coil 680 700 - -
Mibi03g0856 1137 SUPERFAMILY GAF domain-like 409 586 - -
Mibi03g0856 1137 Gene3D - 212 562 IPR029016 -
Mibi03g0856 1137 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1114 IPR003594 -
Mibi03g0856 1137 ProSiteProfiles PAC domain profile. 693 749 IPR000700 -
Mibi03g0856 1137 SMART gaf_1 231 411 IPR003018 GO:0005515
Mibi03g0856 1137 Pfam PAS fold 622 737 IPR013767 GO:0006355
Mibi03g0856 1137 Pfam PAS fold 753 872 IPR013767 GO:0006355
Mibi03g0856 1137 CDD HisKA 892 949 IPR003661 GO:0000155|GO:0007165
Mibi03g0856 1137 Pfam Phytochrome region 414 588 IPR013515 GO:0006355|GO:0009584
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0856 Mibi-ChrMibi03 15333357 15338532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0856 21 1120 Histidine Kinase Gene Family AT4G18130 62.422 0.0 1448