LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi03g0807	ATGGGTTCCGGTGTTGGTTTGTCTGCTATCAAGAATGGTGATACTGATGTTGCGGAGAAAGATCCTACTGGACGTTACATTCGGTATGATGATATGTTGGGGAGAGGAGCATTCAAGACTGTATATAAGGCATTTGATGAAGTTGAAGGCATGGAAGTTGCTTGGAACCAAGTTAATATAGAAGATGTTTTGCACTATTCACAACAATTGGATAATTTATTTTCTGAGGCACATCTCCTGAAATCATTGAATCATGAAAATATCCTCAAGTTCCATAGTTCATGGGTGGACAATGCAAACAAGACTATTAACATGATAACAGAGTTATTCGTCTCTGGGAGTTTGAAACAATATCAAAGAACTCATCAGAATGTTGAATTGAAAGCTATTAAGAACTGGGCAAGGCAAATTCTTCAAGGTTTATGCTATTTGCATAGCCACAATCCTCCTATCATCCATAGAGATTTGAAATGTGATAATATTTTTATTAATGGTCATACTGGAGAAGTTAAGATTGGAGATCTTGGATTGGCAACTGTCTTATTGCAGCCTACTGCAAAGAGTGTCGTTGGGACACCAGAATTCATGGCACCTGAGCTTTATGAAGAAGAGTATAATGAACTTGCAGACATATATTCATTTGGTATGTGCATATTAGAAATGATCACTTGTGAGTACCCGTACAGCGAATGCCAAAATCCCGCACAGATATATAAGAAAGTTACTTCTGGAATAATGCCTGCTGCCCTCAGTAAAGTGACTGATCCACAAGTAAAGCAGTTCATAGAGAAATGCTTGGTTCCCGCATCTATGAGATTATCTGCATCTGAGCTATTGAACGATCCGTTTCTTGCTACTGATAACATGAAGGAGATCAACCATGCATCGCAATTGCCCAATCACATGGCAAAATTAGTGACACCACCAACAACTGAGCCCCAACCTATGGAGATTGACCAAAGTGTCAGGGATGTTTTACGTGGCCCCTGTTTGGAAGTGACTGGAGGAACTCTTCAAACATCTACTCTAGGTCTTATTATGAAGAATAAGAGCATTGAATTCATGTTACAAGGGGAGAAAAATGCTTCAAACAGAACAATTTCACTTGATTTGCACATTGCTGACGCAAATGGTCATGCAATGGATATACAATTTCCATTCTATCTTGATTCTGATGAAGCATTTTCAGTTGCTGAGGAGATGGTAGTAAGTCTGAATCTGAATGCTGAGCACGTTAGTGTCATTGCCGAACTAATACACACCATGACTATCAGGCTTGTTCCTGACTGGAGAGTTTCGCACCAACAATTATTATATGGAACATATTGTTTGGATTGCCATTCTCATGTATTTTCAAAAGGGGGATCGTCTTTAAGGTGCCAAAGTGAAGAGGATCTTGTTAACTCACTAGTTCTTGATGATAAAGGGAAACATGAAACAATTATGTCAGACATTTCAGCCGAAGATGATATTACTGAAAACTTACTACCTGATTGTGCCCTCTTTGATGGATCCTTTGAGGTCTCCATTGCTAAAAGGTCCAAAAATTTAGATGTTAGGTTATATGATCAAGATAACCACACTTGGGAAGTTGATGGCGGTGGCTCTTTTAACATCAAGGGTCTTGATAACTCAATGAACTCAACTGTCTCATTTGTAGACTCATTTGGCGTTGATAAGGCCAAGAAATTTATTAACATGTCAAGTGTAAATTCTCTTTCTATCGAAAACAGCAATCAATGTGAGGAGCTGCTATCGGAGATCGAGGAAATAAATACACAGTACCAGCTATGCTTTCTTGAACTTACGAAGATAAGGGAGGATGTACTAGAAAACAAGAAAAGTAGATGTAATGGATTGGGAAACCTTTTTGTTTTTCCCTTTCCAGATGTTGATCCTCATTCTTTTACGTCAGTTTATTTTGTTTTCATTTCAATTTTCTCAATACCTTACAATTGTATACTATATTTATCATTGTTAACAAATTGA	1989	0.3791	MGSGVGLSAIKNGDTDVAEKDPTGRYIRYDDMLGRGAFKTVYKAFDEVEGMEVAWNQVNIEDVLHYSQQLDNLFSEAHLLKSLNHENILKFHSSWVDNANKTINMITELFVSGSLKQYQRTHQNVELKAIKNWARQILQGLCYLHSHNPPIIHRDLKCDNIFINGHTGEVKIGDLGLATVLLQPTAKSVVGTPEFMAPELYEEEYNELADIYSFGMCILEMITCEYPYSECQNPAQIYKKVTSGIMPAALSKVTDPQVKQFIEKCLVPASMRLSASELLNDPFLATDNMKEINHASQLPNHMAKLVTPPTTEPQPMEIDQSVRDVLRGPCLEVTGGTLQTSTLGLIMKNKSIEFMLQGEKNASNRTISLDLHIADANGHAMDIQFPFYLDSDEAFSVAEEMVVSLNLNAEHVSVIAELIHTMTIRLVPDWRVSHQQLLYGTYCLDCHSHVFSKGGSSLRCQSEEDLVNSLVLDDKGKHETIMSDISAEDDITENLLPDCALFDGSFEVSIAKRSKNLDVRLYDQDNHTWEVDGGGSFNIKGLDNSMNSTVSFVDSFGVDKAKKFINMSSVNSLSIENSNQCEELLSEIEEINTQYQLCFLELTKIREDVLENKKSRCNGLGNLFVFPFPDVDPHSFTSVYFVFISIFSIPYNCILYLSLLTN	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi03g0807	662	ProSiteProfiles	Protein kinase domain profile.	27	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g0807	662	CDD	STKc_WNK	25	284	-	-
	Mibi03g0807	662	SUPERFAMILY	Protein kinase-like (PK-like)	21	312	IPR011009	-
	Mibi03g0807	662	SMART	serkin_6	27	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g0807	662	Pfam	Protein kinase domain	31	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g0807	662	Gene3D	Transferase(Phosphotransferase) domain 1	110	292	-	-
	Mibi03g0807	662	FunFam	Probable serine/threonine-protein kinase WNK1	12	108	-	-
	Mibi03g0807	662	FunFam	probable serine/threonine-protein kinase WNK9	110	289	-	-
	Mibi03g0807	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468
	Mibi03g0807	662	Gene3D	Phosphorylase Kinase; domain 1	11	108	-	-
	Mibi03g0807	662	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	16	478	-	-
	Mibi03g0807	662	Gene3D	-	365	437	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi03g0807	Mibi-ChrMibi03	13026213	13030529	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi03g0807	1	616	MAP Kinase Kinase Kinase	AT5G41990	49.035	5.49e-174	506

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Mibi03g0807		Pkinase	4.4e-52	CL0016