Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0803 ATGGGGAGAGGAAGATTGGCAATGAAGCTGATAGAGAAAGAGAAATCAAGAAAAGCTACGTTTCAGAAGAGAAAGAATGGAATCTTGAAGAAAGCTCATGAACTTTCTACTCTTTGTGGAGTTGATTGTTGCTTGATCGTTTATAGTCCTAACTCCATTAACGAACTTCCTGAGACTTGGCCTCGAAATCCCGAAGAGGTGGGGAGAATTATTGATAAGTACAAGGCAAAGAGTAAAGAGAAAAGTCCAAAGAATTACAATGTGATGGAGTTCTTCAAGGACAGGAAGAACAAGGTGGAAGCTGAAGCATGTAAGCTCAGGCAGGAGAGACTCCGTAAACTCTATCCGACGTGGGACTTCACATTCGACAAATTCAACGAAGAACAGCTAAGAATGTTTGCCACCATCTTGGATTCCAAGATTGAAAATTGCCAAGAGAGGATCAACATGTTGAAGAAGAAGCGTTACATAGAAGAAAAACAGCAGCAGCAAAAACAAGTAGTATCAGAGTCATCTTCAGACAAATCATCAGTAGCTTCAGCTTCAAACAGAAGCCACCTCAGCTTCATGCACAATAGCAACAACAATAGTACCACGTTGGTGTCATCTAATCATCAAATGCTTCATCCCTTTCATCCAAACCTGATGCCTTTGACTATGATTCCACCGAATAATGATTCTGCAGCAGCAGCACAAAACAATGATTCTGCCTTTGGTCATTTTGATCTGATGATGAGAGAATCATATTGTCCTTCTTCTTCATGGTGTTACACTAATAATAGCAGTAATAATAATTACTATTCTTATCTGCAGAATAATGGTAATATTATGCAGATTCATCATCAAGAAGCAAATTTGCAGGTGAATGATATTCCAGTTGCTCCTATGATGATGCAAGAATTTCAGACAAATCAATATGGGTATAATAATCAGCATGATCAGCTGCTTCAAGTTCTTCATCAGAAGTTCAACTATATGGACCATAAAAAGTAA 993 0.3847 MGRGRLAMKLIEKEKSRKATFQKRKNGILKKAHELSTLCGVDCCLIVYSPNSINELPETWPRNPEEVGRIIDKYKAKSKEKSPKNYNVMEFFKDRKNKVEAEACKLRQERLRKLYPTWDFTFDKFNEEQLRMFATILDSKIENCQERINMLKKKRYIEEKQQQQKQVVSESSSDKSSVASASNRSHLSFMHNSNNNSTTLVSSNHQMLHPFHPNLMPLTMIPPNNDSAAAAQNNDSAFGHFDLMMRESYCPSSSWCYTNNSSNNNYYSYLQNNGNIMQIHHQEANLQVNDIPVAPMMMQEFQTNQYGYNNQHDQLLQVLHQKFNYMDHKK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0803 330 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mibi03g0803 330 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mibi03g0803 330 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mibi03g0803 330 CDD MADS 2 61 - -
Mibi03g0803 330 MobiDBLite consensus disorder prediction 163 201 - -
Mibi03g0803 330 Coils Coil 134 154 - -
Mibi03g0803 330 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Mibi03g0803 330 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Mibi03g0803 330 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Mibi03g0803 330 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi03g0803 330 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0803 Mibi-ChrMibi03 12980251 12981865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0803 1 147 Type I MADS-box Gene Family AT5G55690 35.099 8.79e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi03g0803 SRF-TF 6.1e-20 No_clan