Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0694 ATGGAGCTTTATGGCAGATATCAACAAGACCACACTGAGCTACGCACACAAAACACAAGGAGCTTTTCTCGGCGAGGAAAACTCATGGCGAAGGAAGCTACGCGGTCAAGAAAGATGTCTCTATCATCACCCTCTGCTTCTGCTTCTTCTTCTAATGGACCCTCTACAAGAACTTCTTCTGATGGCAGGATAGTGTTGAGAGTAAAGGTAAATGAGGGGATGAAGAGATCTTCCCAGCTGACTAAGTCAGGGAAGAAACCCAAAGCAAAGCGAAAGAAGGTTAACAAAAAACTTGATGCTAAGAAACCAAAGAAACCTCCAACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAGTTTCAAAAGCAGAATCCAGATGTCAAGTCAATGCGTGATATCGGCAAGGCTTGTGGAGGGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGACATAGCCACAGAAAAACGAGCAGAATTTGATAGAGCAATGATGGAATATAACAAGAAAATGGAAAGTGGAGAGTACGAAGAAACTGATGAAGAATCATTTGAGGATGTGTAA 576 0.4184 MELYGRYQQDHTELRTQNTRSFSRRGKLMAKEATRSRKMSLSSPSASASSSNGPSTRTSSDGRIVLRVKVNEGMKRSSQLTKSGKKPKAKRKKVNKKLDAKKPKKPPTAFFYFLEDFRKEFQKQNPDVKSMRDIGKACGGKWKTMTYEEKVQYYDIATEKRAEFDRAMMEYNKKMESGEYEETDEESFEDV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0694 191 Gene3D High mobility group box domain 97 187 IPR036910 -
Mibi03g0694 191 MobiDBLite consensus disorder prediction 36 62 - -
Mibi03g0694 191 Pfam HMG (high mobility group) box 103 172 IPR009071 -
Mibi03g0694 191 CDD HMGB-UBF_HMG-box 108 168 - -
Mibi03g0694 191 MobiDBLite consensus disorder prediction 1 103 - -
Mibi03g0694 191 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 103 172 IPR009071 -
Mibi03g0694 191 MobiDBLite consensus disorder prediction 17 34 - -
Mibi03g0694 191 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 75 187 IPR031061 -
Mibi03g0694 191 SUPERFAMILY HMG-box 96 177 IPR036910 -
Mibi03g0694 191 MobiDBLite consensus disorder prediction 81 100 - -
Mibi03g0694 191 SMART hmgende2 102 173 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0694 Mibi-ChrMibi03 9421605 9426000 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mibi03g0694 HMG_box 6.2e-18 CL0114