Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0621 ATGAAGAAGGTGTTACCGGAGAAGACGATGATTTCTACAGAAGCGAAATTAACGGTGGAAGAATGCTTATCAGCATTCATAGCCTTCATCACAAAAAGAGCCGCCAAGAAGAGCAAAGAAGAAGAACGCCATACAATCGACGGCGACGACATCATCTGGGCGATGAAATCCCTCGGATTCAACCATTACGTGCCTCTCCTTCAGAATTACCTCGACACTTACCGAAACCCTAACGACGCGAATCAGCCGGAGATGACGGAGACGGAGACGGAGACAAGTGAAAGCGGCGTTCCGTTATGGCTGCTCCGCCGTCTTGGCTACGGCGACGGCGACGGTTACGGCGAGTTTCCGATTGGGATTCTTGGAGTTGGGACTGTTCAGAAATTTCAAGATTTGCCCGCCATCATTTTGCGCTATTATTGA 423 0.4965 MKKVLPEKTMISTEAKLTVEECLSAFIAFITKRAAKKSKEEERHTIDGDDIIWAMKSLGFNHYVPLLQNYLDTYRNPNDANQPEMTETETETSESGVPLWLLRRLGYGDGDGYGEFPIGILGVGTVQKFQDLPAIILRYY 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0621 140 Gene3D Histone, subunit A 1 96 IPR009072 GO:0046982
Mibi03g0621 140 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 82 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mibi03g0621 140 SUPERFAMILY Histone-fold 1 84 IPR009072 GO:0046982
Mibi03g0621 140 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Mibi03g0621 140 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Mibi03g0621 140 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Mibi03g0621 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0621 Mibi-ChrMibi03 8197789 8198211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0621 1 75 CCAAT-HAP3 Transcription Factor Family AT4G14540 54.667 1.46e-23 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mibi03g0621 CBFD_NFYB_HMF 1.5e-11 CL0012