Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0606 ATGTTGTGCAAGCAGGAGAGATTGAAGATGTTATTAGATGTGGATGTGATGGGGAACAAGAAAAGGAAGAGATGTGGGAGGGTTTTCAAATTCAAGAACTTTGGGGAGGCAGGATATCCTGTGGAGTTTAAAGGGCCATTTCGTGAGAACGTAAAAGCTTTGCTTGAGTTTGCCAATTGTGAGTCTAAATACTTAGGATATGGAATGCCCATTTGGTCTTTCCAACTTGAGGTTCATCGCCACCCTCCTTCTCACATCTTCTTGTTTGTCATTGAAGAAGCAATAACTGACACTTCTTTGAACCGCCATTGCAAGCATTGTCAATATGTAGGATGGGGAAATCATTTCATATGCAATAAGAAGTATCACTTTGTGTTGCCATCAAAGGAGACTTTGGCTGCAAGTTTGAGCTGTGAAGTGGCGTGTGAAGCAATTACTGGATCAGCTATGAGCAACAACAACAGTAACAATTGTAAGTCCAAATTAATAGAATTAAAAGGCCATATGATGCAAGCTGTTTTTCACTCTAATGGATTCGGCCATTTGCTCTCTGTCAATGGCCTCGAAACCGGGTCGGATCTTTCCGGGCATCAGATCATGGATTTCTGGGATCGCTTGTGCACTGGATTGCAAGCAAGGAAAGTGAGTTTGAGTGATGTGTCACAGAAAAAAGGCATGGAACTAAAACTCATCAATGGAATAGCATATGGAGAACCATGGTTTGGAAGGTGGGGCTACAAATTTGGAAGAGGATGCTTTGGAGTGACTCAACCTACATACCAAAAGGCCATAGAAGCCCTAAGAAGCATCCCACTTTACCTTCTAAACCACCAAATAAATAATGCTGACATACCAATCATCTTCTCAAGGTACCAAACACTCTCTTCTGATCAAACCCTGATCACACTTGGTGACCTATTCCACTTCATGTTGGAGCTCAAGTCTCGCCTTCCTCGCCGGGAAAACTACTACTCCGGAGATTCCTACAACACCGCCGACATGTTCTCCGTCGAAGCCAATTGCCGGTGGTCCCCAAAGAGGATTGAAATGGCAACTAGGGTTATAGTTGAGGCCCTAAGAAGATCTGAGTCCAGATGGATCTCAAGGCAAGAGGTTAGGGATGCAGCTAGAACCTACATTGGAGACACCGGTTTGCTAGATTTTGTGTTGAAATCCCTTGGGAATCACGTTGTTGGGAACTTTATGGTTCGTAGAAGCTTAAATCCTGTCACTAAAGTTCTTGAATATTGCTTAGAAGACATGTCCAATATTGTCTTCCCCACTCAAAATCATCATAATCAAGAAGGTAATAATAATAGGTACAAAATCACTAGGGCTCAAGTGACGAAGGACATGTTTTATTTATACAAGTACATTATCCTTAAAGACCCCAAGCAAATTACACAACAAGGATCACCAATTTTCTCAGCAATCCCGTTGGCAGCCAGAATAATCCTTGATACCAAGTTTCTGATCAAAGACTACTTTGGAGAGCTTCCTCCTTGTCAAGCTCATGATCTTGGTGGGATGGAGGGAAAACTAAGTCTTTATTGTACAATAATGTTGAGAAACTACTACCCAAACAAGGTGTTATTAATGATGATGCCACCTTACGAGTGTGTCACATTGAAAAGTGATGCCACTATTAATGAGTTGAAGCTAGAAGTTGAGAGAAACTTCAGAGAGATATATTGGGGATTGAGAAGTTTTACTGTGGATTCTATTAAGGGCTTGGAAATTTGTGGTGGGAATGAAATGGTGTTTAAAATAGTGGAAGTGGGTAGGAAGTTGGTCGTTGAAGGGTGGATTGATAATAATGTTAATAATAATAATATTAAAAATGGGGACAAGAACATTATAAATAACAACATAGGAGAGATTTGTGAGGTTAATTATTATGATAATGATGGAATTGTTGTGGAATGTAGTTGTGGGACTAAAGAAGATGATGGAGAGAGAATGGTGTGTTGTGATATTTGTGAAAGTTGGCAGCATACGAGGTGTGTTCGCATTCCTAATGATGAACAAGTTCCGTCTATATTTATCTGCAAAACCTGTGAACAAGAAATTGTTATGTTCCCTTCCTTGCCATAG 2094 0.4059 MLCKQERLKMLLDVDVMGNKKRKRCGRVFKFKNFGEAGYPVEFKGPFRENVKALLEFANCESKYLGYGMPIWSFQLEVHRHPPSHIFLFVIEEAITDTSLNRHCKHCQYVGWGNHFICNKKYHFVLPSKETLAASLSCEVACEAITGSAMSNNNSNNCKSKLIELKGHMMQAVFHSNGFGHLLSVNGLETGSDLSGHQIMDFWDRLCTGLQARKVSLSDVSQKKGMELKLINGIAYGEPWFGRWGYKFGRGCFGVTQPTYQKAIEALRSIPLYLLNHQINNADIPIIFSRYQTLSSDQTLITLGDLFHFMLELKSRLPRRENYYSGDSYNTADMFSVEANCRWSPKRIEMATRVIVEALRRSESRWISRQEVRDAARTYIGDTGLLDFVLKSLGNHVVGNFMVRRSLNPVTKVLEYCLEDMSNIVFPTQNHHNQEGNNNRYKITRAQVTKDMFYLYKYIILKDPKQITQQGSPIFSAIPLAARIILDTKFLIKDYFGELPPCQAHDLGGMEGKLSLYCTIMLRNYYPNKVLLMMMPPYECVTLKSDATINELKLEVERNFREIYWGLRSFTVDSIKGLEICGGNEMVFKIVEVGRKLVVEGWIDNNVNNNNIKNGDKNIINNNIGEICEVNYYDNDGIVVECSCGTKEDDGERMVCCDICESWQHTRCVRIPNDEQVPSIFICKTCEQEIVMFPSLP 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0606 697 CDD PHD_MMD1_like 641 686 - -
Mibi03g0606 697 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 22 691 - -
Mibi03g0606 697 SMART PHD_3 641 687 IPR001965 -
Mibi03g0606 697 Pfam PHD-finger 642 688 IPR019787 -
Mibi03g0606 697 ProSitePatterns Zinc finger PHD-type signature. 642 686 IPR019786 -
Mibi03g0606 697 SUPERFAMILY FYVE/PHD zinc finger 633 689 IPR011011 -
Mibi03g0606 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 691 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0606 Mibi-ChrMibi03 8019687 8023378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0606 20 697 PHD Transcription Factor Family AT5G22260 51.511 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi03g0606 PHD 1.2e-08 CL0390