Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0577 ATGATAATTGGAATGGACCCTGGAAAGCTCTTCATTGGTGGAATTTCTTGGGACACAAATGAAGAACGACTCAGACAATATTTTCAGAATTTTGGAGATGTGGTTGAAGCAGTGATTATGAAGGATCGGACTACGGGGCGTGCTCGTGGTTTTGGATTCATTGTTTTTTCTGATCCTTCTGTTGCTGAACAAGTTGTTATGGAGAAGCATGTCATAGATGGTAGAACTGTTGAAGCGAAAAAGGCTGTCCCTAGGGATGATCAGAACATTTCTAACAGAATCAACAACAGCATTCATGGATCACCTGGTCCGACTCGCACAAAGAAAATATTTGTTGGAGGTCTTGCATCCACAGTTACTGAGAGCGACTTCAAGAAGTACTTTGATCAATTTGGAACAATAACAGATGTAGTTGTGATGTATGACCATAACACACAAAGACCAAGAGGTTTTGGGTTCATCACCTATGATTCCGAGGAAGCCGTGGATAAGGTTCTGTACAAAACATTTCATGAACTGAATGGTAAGATGGTTGAGGTTAAGAGGGCCGTTCCAAAGGAATTATCCCCAGGTCCAAGTAGAGGTCAATTAGCTGGATATAACTATGGTTTAAGTAGAGTTAGTGGCTTTTCTAATGGTTTCCTTCAGGGTTATAATCCTAGCTTGGTTGGAGGGCATGGACTTAGAGCAGATGGCAGATTTAGTCCTGTTTCTGTTGGTCGAAATGGATATCCTCCATTGAGTTCCAGTTATGGGACAGGATTCAATTTTGAACCAGCATTTAATCAAAATGGGAATTCAAACTTAACATCTTCCCTTATGTTAGGACGAGCTTTGAACCCCTCTTCATACAATGGAAATTCAAGCAGGTACCATAATGTCATGGGATATACTGGAACAAGTGTAGGAAACAACTCAACTAATCAGAATTTGTGGGGGAGTGACAATATTAGCTTCACTAATAACCCTACGAATTCTGATGGTTTTCATGGGTATGGGAGTCAAAATTCAAGCATGGGTTCTTTTGGTAATATTGGGACACTCTGGAGTTCCTCCCCTAGTGGAGATCAAGCTGGAATTGTTGGCTCTGGTTATGGTAAGGGTACTCTTAACTATGGCCCAGGAGATGTTAATTTTAGGTCAAAAGCAGTAGGATTTGGAAAAGGTAGTAGTGATGCCATTGCTGAATCAGTGTCATCATATGCTCTATCCAACGGTAGTTTCGATGGGGCGTATAAAGACATTTATGAATCTGGGTCATTTTTTGGCGACCACACTTGGAGATCGTCACCCTCAGAACTAGAAGATACTGGTTCTCTTGGTTATGACCTCGGAAATGTTGTTTCAGATTTGATAGGCAGAGGCTCTGGAGGCCAAATTGGTGCTTATACTGTTGCCAATAGACAGTCAAATAGAGGAATTGCTGCATAG 1431 0.4137 MIIGMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFSDPSVAEQVVMEKHVIDGRTVEAKKAVPRDDQNISNRINNSIHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRGQLAGYNYGLSRVSGFSNGFLQGYNPSLVGGHGLRADGRFSPVSVGRNGYPPLSSSYGTGFNFEPAFNQNGNSNLTSSLMLGRALNPSSYNGNSSRYHNVMGYTGTSVGNNSTNQNLWGSDNISFTNNPTNSDGFHGYGSQNSSMGSFGNIGTLWSSSPSGDQAGIVGSGYGKGTLNYGPGDVNFRSKAVGFGKGSSDAIAESVSSYALSNGSFDGAYKDIYESGSFFGDHTWRSSPSELEDTGSLGYDLGNVVSDLIGRGSGGQIGAYTVANRQSNRGIAA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0577 476 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 6 472 - -
Mibi03g0577 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 168 IPR000504 GO:0003723
Mibi03g0577 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 76 IPR000504 GO:0003723
Mibi03g0577 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Mibi03g0577 476 CDD RRM1_hnRNPA_hnRNPD_like 10 80 - -
Mibi03g0577 476 SMART rrm1_1 9 80 IPR000504 GO:0003723
Mibi03g0577 476 SMART rrm1_1 109 181 IPR000504 GO:0003723
Mibi03g0577 476 CDD RRM2_DAZAP1 106 185 IPR034131 GO:0003723
Mibi03g0577 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 7 89 - -
Mibi03g0577 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 105 192 - -
Mibi03g0577 476 SUPERFAMILY RNA-binding domain, RBD 102 206 IPR035979 GO:0003676
Mibi03g0577 476 SUPERFAMILY RNA-binding domain, RBD 6 100 IPR035979 GO:0003676
Mibi03g0577 476 Gene3D - 105 191 IPR012677 -
Mibi03g0577 476 Gene3D - 7 90 IPR012677 -
Mibi03g0577 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0577 Mibi-ChrMibi03 7632163 7635182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0577 10 187 Eukaryotic Initiation Factors Gene Family AT2G36660 30.688 2.14e-15 77.0