Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0519 ATGAAGGTAGCGACTCCGTCAGGTAGTGTATACGACTCCGCCGTCTTCTCCTTGTGGCGTGACTCCGGCGACGTCTCCCTCCAACATCAAGCACCACCCATTCAGTCACGAATGACTAACGAATTTGGGTGTTGTTTCATGGACAACAAGGATGGTGGTTCATCATCATCATCTCCTTGTTCTTCTGTAAAAGCAAAGATCATGGCTCATCCTCATTACCCTCGCCTCCTCGCTGCTTACGTCAACTGTCAGAAGGTAGGTGCACCGCCGGGAGTGGTGGCGAGGCTAGATGAAGCATATGCGGCGGCAGTGGCGGCGGGAATGGGCGGCAACGGTGGTGGGTCTGGCCGTACAGGTGAAGATCCTGCGTTGGATCAATTCATGGAGGCATACTGTGAGATGTTGACAAAGTACGAACAAGAGCTTACCAAACCCTTTAAGGAAGCTATGTTCTTCCTTCACACCATAGAGCGTCAATTCAAAGCCCTCACAATAGATTCTCCCATAAACTTTGCTTGTAATGAGAATACTGATGGGGCAGAATCATCTGAAGATGAAATGGATGTCGAAAACAACCGAGACATGATCGATCCACAGGCGGAGAATAAGGAGCTAAAGGATAAGCTTCTGAGAAAGTACAGCGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTGCCTAAAGAAGCAAGACAACAATTGCTTGATTGGTGGAACGTTCACTATAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTTGCAGAATCAACAGGGTTGGATCACAAGCAAATAAACAATTGGTTCATTAATCAAAGAAAACGTCACTGGAAGCCTTCGGAAGACATGCAATTTGTGGTGGTGGATCCAATGCATCCTCATCACTACTTCATGGACAACTCTCTGCCCACTCAATATCCCATGGATTTCTCTCACACTATGCTTTGA 972 0.4743 MKVATPSGSVYDSAVFSLWRDSGDVSLQHQAPPIQSRMTNEFGCCFMDNKDGGSSSSSPCSSVKAKIMAHPHYPRLLAAYVNCQKVGAPPGVVARLDEAYAAAVAAGMGGNGGGSGRTGEDPALDQFMEAYCEMLTKYEQELTKPFKEAMFFLHTIERQFKALTIDSPINFACNENTDGAESSEDEMDVENNRDMIDPQAENKELKDKLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWNVHYKWPYPSESQKLALAESTGLDHKQINNWFINQRKRHWKPSEDMQFVVVDPMHPHHYFMDNSLPTQYPMDFSHTML 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0519 323 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Mibi03g0519 323 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981|GO:0006355
Mibi03g0519 323 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Mibi03g0519 323 FunFam Homeobox protein knotted-1-like 2 229 291 - -
Mibi03g0519 323 SMART KNOX2_2 114 165 IPR005541 GO:0003677|GO:0005634
Mibi03g0519 323 SMART ELK_2 204 225 IPR005539 GO:0003677
Mibi03g0519 323 CDD homeodomain 236 288 IPR001356 GO:0003677
Mibi03g0519 323 SUPERFAMILY Homeodomain-like 226 303 IPR009057 -
Mibi03g0519 323 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Mibi03g0519 323 SMART HOX_1 226 291 IPR001356 GO:0003677
Mibi03g0519 323 Pfam KNOX2 domain 118 164 IPR005541 GO:0003677|GO:0005634
Mibi03g0519 323 Pfam ELK domain 204 225 IPR005539 GO:0003677
Mibi03g0519 323 Gene3D - 222 293 - -
Mibi03g0519 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 293 - -
Mibi03g0519 323 Pfam KNOX1 domain 63 100 IPR005540 GO:0003677|GO:0005634
Mibi03g0519 323 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0519 Mibi-ChrMibi03 6784895 6792572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0519 63 323 Homeobox Transcription Factor Family AT1G62360 73.134 3.19e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mibi03g0519 KNOX2 5.6e-21 No_clan