Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0517 ATGGCGAAGCGTCACACTCACTCGTTCCTCTCATACAAACACAAAGTCCTCACCTTTCAACCTTTCTTAGGGTTCCTCTGTTCTTCTTCTTCTTCTTGCCAAAATCTTAGGGCTTACAATTCGTACATTTCCAATCTTATGGCGAAAACTAGACCAGGCAGAAAGGACTTGGACTCTTATACCATCAGGGGTACAACCAAAGTCGTCAGAGCTGGAGACTGTGTACTGATGCGACCTTCCGACACTAGCAAGCCCCCGTACGTTGCTCGCGTGGAGAAGATCGAACAAGACAATAGGAACAACGTTAAAGTTCGTGTGAGATGGTATTATCGGCCTGAAGAATCGATTGGAGGACGCAGGCAGTTCCACGGAGCTAAAGAGTTGTTCTTGTCTGACCATTATGATGTTCAGAGTGCTCACACCATTGAAGGGAAGTGTATTGTACACTCTTTTAAGAACTACACTAAGCTTGAGAATGTAGGAGCTGAAGATTACTACTGTAGATTTGAATACAAGGCTGCTACTGGGGCTTTCACGCCGGACCGTGTTGCTGTGTATTGCAAATGCGAGATGCCTTATAACCCGGACGACCTCATGGTGCAATGTGAAGGGTGCAAAGATTGGTATCATCCTGTTTGTGTGGGCATGACTATTGAAGAAGCAAAAAAACTGGACCATTTTGTATGTTCTGAATGTTCTTCTGATGATGACATGAAAAAACCCCACCCTACATTTTCTGCATCACCGGCATCCGATGGCAAGGTGGAGCCCAAGCGGCGGAAGAGATGA 789 0.4588 MAKRHTHSFLSYKHKVLTFQPFLGFLCSSSSSCQNLRAYNSYISNLMAKTRPGRKDLDSYTIRGTTKVVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPVCVGMTIEEAKKLDHFVCSECSSDDDMKKPHPTFSASPASDGKVEPKRRKR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0517 262 ProSitePatterns Zinc finger PHD-type signature. 187 232 IPR019786 -
Mibi03g0517 262 SMART PHD_3 186 233 IPR001965 -
Mibi03g0517 262 ProSiteProfiles Zinc finger PHD-type profile. 184 235 IPR019787 -
Mibi03g0517 262 MobiDBLite consensus disorder prediction 233 262 - -
Mibi03g0517 262 SMART BAH_4 67 182 IPR001025 GO:0003682
Mibi03g0517 262 ProSiteProfiles BAH domain profile. 67 182 IPR001025 GO:0003682
Mibi03g0517 262 PANTHER OS08G0421900 PROTEIN 47 254 - -
Mibi03g0517 262 FunFam Chromatin remodeling protein EBS 41 178 - -
Mibi03g0517 262 CDD BAH_BAHCC1 68 202 - -
Mibi03g0517 262 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Mibi03g0517 262 Pfam PHD-finger 186 234 IPR019787 -
Mibi03g0517 262 SUPERFAMILY FYVE/PHD zinc finger 178 237 IPR011011 -
Mibi03g0517 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 247 IPR013083 -
Mibi03g0517 262 FunFam Bromo-adjacent homology (BAH) domain-containing protein 179 250 - -
Mibi03g0517 262 Gene3D - 27 178 IPR043151 -
Mibi03g0517 262 Pfam BAH domain 69 181 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0517 Mibi-ChrMibi03 6746599 6750727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0517 77 178 Core DNA Replication Machinery Family AT4G14700 29.126 5.23e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi03g0517 BAH 4e-24 No_clan