Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0504 ATGGACACCTTAATCCAAAAAATCCTCCTTTTTTCATGCTTTCTTCTTCCTTACTTGACAACAACGTTGTACGCACATTCAACAGACAACAATTACATCAATACCCCCGAGCTCAATTCAAGCTATATTCCCGAAACTCATAAGAATCTTATCCTCAACATCATAGATTCTTGCTGGATATCCAACTCAAACTGGGAATCAAATCGTCAAGCCCTAGCTGATTGTGCTGTTGGGTTTGGCAAAGATGCCATTGGAGGTAAGTTTGGTGCTATATATGAGGTTACTGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGGACACTTCGTTATGGTGTGATCCAAACACAACCTCTTTGGATAATATTCGCCAAGGATATGGTTATTACCCTCGAGAATGAGCTTATAGTGAATAGCTATAAGACCATTGATGGTAGAGGAGCCAAAGTGGAGATTGCATATGGACCTTGCATTACCATTCAAGATGTCACTCACGTCATTATTCATGGGATAAGTATCCACGATTGTAAGCTAGGAAAAGTTGGGATGGTTAGGAGTAGTGAAGATCATGTGGGGCAGCGAGGAGGCTCAGATGGAGATGGCATTGCCATTTTTTCTTCTTCGAACATTTGGATCGATCATTGCTTCTTGGCTAGTTGTACAGATGGCCTTATTGATGTTATTCATGCCTCAACTTCTATCACTATCTCTAACAACTACTTTACGCAGCATGACAAAGTAATGCTGCTAGGGCACAACGATGATTATACGGCCGATAGAATAATGAAAGTGACAATAGCCTTCAATCGCTTCGGCAGTGGCCTCGTAGAGAGAATGCCAAGGGTGAGATTTGGGTATGCGCATGTGGTGAACAACCAATATGAGGAGTGGACTCAGTACGCCATTGGAGGCAGTGCCGACCCTACCATTTTAAGTGAAGCCAATTACTTCATAGCTCCAAACAACGTTGCTGCAAAACAGGTTACAAAGAGGGAAACGAGTGATAAAAACTGGAACAATTGGAAATGGAGGACTTACAAGGATATATTCATGAATGGAGCATATTTTGTTCCATCAGGCTATGGAAGTTGTGCCCCTTATTATTCAGATTCACAATCTTTTGTAGTTGCTTCTGCCTTATTGATCCCTCAGTTAACTTTTAATGCTGGTCCCCTTCCTTGTGCTATCGGCAAGGCTTGTTCATAA 1206 0.4221 MDTLIQKILLFSCFLLPYLTTTLYAHSTDNNYINTPELNSSYIPETHKNLILNIIDSCWISNSNWESNRQALADCAVGFGKDAIGGKFGAIYEVTDASDDPVNPKPGTLRYGVIQTQPLWIIFAKDMVITLENELIVNSYKTIDGRGAKVEIAYGPCITIQDVTHVIIHGISIHDCKLGKVGMVRSSEDHVGQRGGSDGDGIAIFSSSNIWIDHCFLASCTDGLIDVIHASTSITISNNYFTQHDKVMLLGHNDDYTADRIMKVTIAFNRFGSGLVERMPRVRFGYAHVVNNQYEEWTQYAIGGSADPTILSEANYFIAPNNVAAKQVTKRETSDKNWNNWKWRTYKDIFMNGAYFVPSGYGSCAPYYSDSQSFVVASALLIPQLTFNAGPLPCAIGKACS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0504 401 PRINTS Pollen allergen Amb family signature 341 365 IPR018082 -
Mibi03g0504 401 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Mibi03g0504 401 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Mibi03g0504 401 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Mibi03g0504 401 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Mibi03g0504 401 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Mibi03g0504 401 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Mibi03g0504 401 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Mibi03g0504 401 Pfam Pectate lyase 135 317 IPR002022 -
Mibi03g0504 401 PANTHER PECTATE LYASE 18-RELATED 28 398 IPR045032 GO:0030570
Mibi03g0504 401 Gene3D - 52 393 IPR012334 -
Mibi03g0504 401 SUPERFAMILY Pectin lyase-like 53 391 IPR011050 -
Mibi03g0504 401 SMART amb_all 126 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0504 Mibi-ChrMibi03 6606558 6608666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0504 8 400 Polysaccharide Lyase AT4G22080 66.667 0.0 540