Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0503 ATGGCCACCTTCACACCACTTTTCTTCCTTTCAGCAATACTATTGTCTTTCCTACCATATGCTTACACTACTCCCAAAATTCCTTATAACCTTAACCTCAACACCATAGATTCTTGCTGGAGATCTAACTCAAACTGGGCATCAAATCGACAAGCCCTAGCTGGTTGTGCTGTTGGCTTTGGCAAAGATGCCAATGGAGGTAAGTTTGGTGCTATATATGATGTCACCGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGGACACTTCGCTATGGTGTGATCCAAACACAACCTCTTTGGATAATATTCGCCAAGGACATGGTTATTACCCTCGAGAATGAGCTTATAGTGAATAGCTATAAGACCATTGATGGTAGAGGAGCCAAAGTGGAGATTGCTTATGGACCTTGCATCACCATTCAAGATGTTACTCACGTCATTATACATGGCATTAGCATCCACGATTGTAAACCAGGAAAATCTGGGATGGTGAGAAGCAGTAGTGATCATGTAGGACATCGTCTAGGTTCAGATGGAGACGCCATTAGCATATTTGGTTCCTCAAATGTTTGGGTTGACCATTGCTTCCTTGCTCGTTGTTTCGACGGTCTCATTGATATTATTCACTCCTCAACTTTCATCACCATTTCTAACAATTACTTCACACAGCACGATAAGGTGATGCTGTTAGGACACAGCGATGGATACAATGCGGATAAGATAATGAAAGTGACAATAGCTTTCAACCGTTTTGCTAGCGGCCTATATGAAAGGATGCCAAGGGTAAGATTTGGGTACGCCCATGTGGTCAACAACAGATATGATGGATGGAGGATGTATGCCATTGGTGGTAGTGCTGAACCAACCATTCTGAGCGAAGGGAACTACTTTATAGCTCCAAATAACCCCAGTGGGAAACAGGTTACCAAGAGGATAGTGAAGGGAGGGTGGAAGAATTGGAAATGGAGGACTTATAAGGATGCATTTGTGAATGGAGCCTATTTTGTTCCGTCGGGTTATGGAACTTGTGCCCCTTATTATTCAAGTTCTCAATCTTTTGTTGCTGCTTCAGCATCCTTGGTGCCTGCATTAACCCTTCATGCTGGTCCTCTGAGTTGTATTGTTGGGAATGCTTGTTAA 1143 0.4348 MATFTPLFFLSAILLSFLPYAYTTPKIPYNLNLNTIDSCWRSNSNWASNRQALAGCAVGFGKDANGGKFGAIYDVTDASDDPVNPKPGTLRYGVIQTQPLWIIFAKDMVITLENELIVNSYKTIDGRGAKVEIAYGPCITIQDVTHVIIHGISIHDCKPGKSGMVRSSSDHVGHRLGSDGDAISIFGSSNVWVDHCFLARCFDGLIDIIHSSTFITISNNYFTQHDKVMLLGHSDGYNADKIMKVTIAFNRFASGLYERMPRVRFGYAHVVNNRYDGWRMYAIGGSAEPTILSEGNYFIAPNNPSGKQVTKRIVKGGWKNWKWRTYKDAFVNGAYFVPSGYGTCAPYYSSSQSFVAASASLVPALTLHAGPLSCIVGNAC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0503 380 PANTHER PECTATE LYASE 18-RELATED 32 377 IPR045032 GO:0030570
Mibi03g0503 380 Gene3D - 33 373 IPR012334 -
Mibi03g0503 380 SUPERFAMILY Pectin lyase-like 34 371 IPR011050 -
Mibi03g0503 380 Pfam Pectate lyase 116 298 IPR002022 -
Mibi03g0503 380 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Mibi03g0503 380 PRINTS Pollen allergen Amb family signature 351 374 IPR018082 -
Mibi03g0503 380 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Mibi03g0503 380 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Mibi03g0503 380 PRINTS Pollen allergen Amb family signature 321 345 IPR018082 -
Mibi03g0503 380 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Mibi03g0503 380 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Mibi03g0503 380 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Mibi03g0503 380 SMART amb_all 107 304 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0503 Mibi-ChrMibi03 6599920 6604517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0503 9 380 Polysaccharide Lyase AT1G11920 69.973 0.0 537