Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0480 ATGGGCTGTCACAGTAGCAAGGAGAAAAAATCAAAGGCAGAATTTCGTGGCTATGGATCAGCCACGAGTAGTACTGGAAGTGCCCATCAAAGTTATGACACTGTTCAGCCTACTTCTACTCAAAACCAATCTCAGATTCGAAATTCAGAACCAAAACCCCAACCGCCGCCGCCATCTCAGCCGCATGTGACGGTCCCGGCGAAACCCACTTCCCTGAATGACAGACCCCAGCAACAGAAGCCAGAAGGTACGATTTTGGGAAAGCCTATTGAAGATGTTAGGAAATTCTACACTTTGGGGAAAGAACTTGGGAGGGGGCAATTTGGGATTACCTATTTGTGTACTGAGAATTCCACTGGTAGAACTTATGCTTGCAAATCTATATTGAAGAGGAAGCTTGTGTCTAAAGCAGATAAGGAAGATATGAAGAGGGAAATTCAGATTATGCAGCATTTATCTGGGCAACCCAACATTGTTGAGTTTAAGGGTGCTTATGAGGATAGATATTCTGTGCATCTTATAATGGAGCTTTGTGCTGGTGGGGAGCTATTTGATCGAATCATAGCTCAAGGTCATTATTCTGAGAGAGCTGCTGCATCAATTTGTAGGGCTATTGTTAATGTTGTGCACATTTGTCACTTCATGGGGGTTATGCATCGTGATCTGAAGCCTGAAAATTTCCTGCTTTCTGGCAAAGAGGAGGGAGCAGCGCTTAAGGCTACCGATTTTGGACTATCTGTGTTCATTGAAGAAGGGAAAGTGTACCATGATATGGTAGGCAGTGCTTATTATGTTGCTCCTGAGGTACTGCATCGTAGTTATGGAAAGGAAATAGACATTTGGAGTGCAGGCATCATGTTGTATATTCTCCTTAGTGGTGTACCTCCTTTTTGGGCTGAAAACGAAAAGGGAATATTTGATGCTATATTGGAAGGAAAAATTGACTTTGAGAGTCAGCCATGGCCCTCAATATCAGATAGTGCTAAAGATTTAGTCAGGAAGATGCTAACACAGGACCCGAAGAAGCGAATCACTTCTGCACAAGTCCTTGAACACCCATGGATGAGAGAAGGTCAGGCATCAGATAAGCCAATTGACAGCGCTGTTCTGTCGAGAATGAAGCAATTCAGGGCAATGAATAAGCTCAAAAAGCTTGCACTGAAGGTTATTGCCGAGAATCTTTCTGAAGAGGAGATTAAAGGTCTCAAAGCAATGTTCACCAATATGGACACCGACAATAGTGGCTCTATCACCTATGAAGAACTGAAGACAGGTTTGGCCAGGATTGGATCACAACTGTCTGAGGCTGAAGTGAAGCAACTTATGGAAGCTGCTGATGTTGATGGGAATGGAACGATAGACTATATCGAATTCATCTCAGCTACAATGCATAGGCATAGACTTGAGCGAGATGAACACTTATACAAAGCATTTCAGTATTTTGATAAGGATAACAGTGGGTATATTACTAGAGATGAATTGGAGACTGCCATGACACAGCACGGAATGGGTGATGAAGCTACGATTAAGGAAATAATATCTGAGGTGGATGCAGATAATGATGGGAGAATAAACTATGAGGAATTCTGCACAATGATGAGGAGTGGAATGCAACACCAGGGACAACTTTTTTAA 1635 0.4281 MGCHSSKEKKSKAEFRGYGSATSSTGSAHQSYDTVQPTSTQNQSQIRNSEPKPQPPPPSQPHVTVPAKPTSLNDRPQQQKPEGTILGKPIEDVRKFYTLGKELGRGQFGITYLCTENSTGRTYACKSILKRKLVSKADKEDMKREIQIMQHLSGQPNIVEFKGAYEDRYSVHLIMELCAGGELFDRIIAQGHYSERAAASICRAIVNVVHICHFMGVMHRDLKPENFLLSGKEEGAALKATDFGLSVFIEEGKVYHDMVGSAYYVAPEVLHRSYGKEIDIWSAGIMLYILLSGVPPFWAENEKGIFDAILEGKIDFESQPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGQASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFTNMDTDNSGSITYEELKTGLARIGSQLSEAEVKQLMEAADVDGNGTIDYIEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDADNDGRINYEEFCTMMRSGMQHQGQLF 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0480 544 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Mibi03g0480 544 Pfam EF-hand domain pair 472 534 IPR002048 GO:0005509
Mibi03g0480 544 Pfam EF-hand domain pair 402 462 IPR002048 GO:0005509
Mibi03g0480 544 SUPERFAMILY Protein kinase-like (PK-like) 95 372 IPR011009 -
Mibi03g0480 544 MobiDBLite consensus disorder prediction 1 15 - -
Mibi03g0480 544 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g0480 544 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g0480 544 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Mibi03g0480 544 SMART efh_1 437 465 IPR002048 GO:0005509
Mibi03g0480 544 SMART efh_1 473 501 IPR002048 GO:0005509
Mibi03g0480 544 SMART efh_1 508 536 IPR002048 GO:0005509
Mibi03g0480 544 SMART efh_1 401 429 IPR002048 GO:0005509
Mibi03g0480 544 MobiDBLite consensus disorder prediction 17 49 - -
Mibi03g0480 544 CDD EFh_PI-PLC 402 535 - -
Mibi03g0480 544 ProSiteProfiles EF-hand calcium-binding domain profile. 505 539 IPR002048 GO:0005509
Mibi03g0480 544 CDD STKc_CAMK 96 354 - -
Mibi03g0480 544 ProSitePatterns Protein kinases ATP-binding region signature. 103 130 IPR017441 GO:0005524
Mibi03g0480 544 Gene3D - 366 540 - -
Mibi03g0480 544 MobiDBLite consensus disorder prediction 50 64 - -
Mibi03g0480 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 91 529 - -
Mibi03g0480 544 Gene3D Transferase(Phosphotransferase) domain 1 183 365 - -
Mibi03g0480 544 MobiDBLite consensus disorder prediction 65 80 - -
Mibi03g0480 544 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Mibi03g0480 544 FunFam Calcium-dependent protein kinase 1 362 537 - -
Mibi03g0480 544 CDD EFh 476 534 IPR002048 GO:0005509
Mibi03g0480 544 SUPERFAMILY EF-hand 393 533 IPR011992 -
Mibi03g0480 544 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g0480 544 MobiDBLite consensus disorder prediction 1 87 - -
Mibi03g0480 544 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Mibi03g0480 544 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Mibi03g0480 544 FunFam Calcium-dependent protein kinase 1 99 182 - -
Mibi03g0480 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Mibi03g0480 544 ProSitePatterns EF-hand calcium-binding domain. 517 529 IPR018247 -
Mibi03g0480 544 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Mibi03g0480 544 FunFam calcium-dependent protein kinase 1 183 362 - -
Mibi03g0480 544 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0480 Mibi-ChrMibi03 6314367 6318331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0480 1 544 EF-hand Containing Proteins AT4G04720 74.495 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mibi03g0480 Pkinase 9.9e-74 CL0016