Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0473 ATGATGCAGCCTGGTCATGGCGGCATGGCTCCTCCCACCATGGGCGGCCAACAACAACCTCCTCAACAATACCCTCAACAACAACAACAACAACAACAACAACAGCAACATCCCTACATGATGATGCCACCTCAGCCTCAGGCTCCTCCCATGTGGGCCCCCTCCGTTCAACCGCCGCCTCAGTCTCTCGCCGCTCAGCCCTCAAGCTCCGACGAGGTCCGTACTCTCTGGATCGGAGATTTGCAGTTCTGGATGGATGAGAACTATCTCTACAATTGTTTCGCTCATACAGGAGAGGTGGCTTCTGTGAAAGTTATTCGAAACAAGCTAACTAATCAATCTGAAGGTTATGGGTTTGTCGAGTTTTTCACGCGCGCAGCTGCTGAGAGGATACTTCAAACATTTAGTGGAACCATTATGCCGAATGGCGGGCAAACCTACAGGTTGAACTGGGCAAGTTTTAGTTCGGGTGAGAAGCGGCATGATGATACTCCAGATCACACGATATTCGTTGGAGATTTATCTGCAGATGTTACAGATTACATGCTGCAGGAGGTATTTCGGGCTAGGTACTCTTCAGTTAAAGGTGCTAAAGTTGTGATCGATAGAGCCACTGGGAGAACAAAGGGTTATGGTTTCGTCAGGTTCGGGGATGAAAATGAACAAATCCGAGCTATGACTGAGATGCAAGGTGTGTTATGTTCATCAAGACCCATGCGGATTGGACCAGCCACTAACAAAAACCCTGGCACTCAGCCAAAAGCTTCATATCAGAATCCTCAAGGGGCACAGAATGAGAATGATCCAAATAATTCAACTATTTTTGTTGGGAATTTGGATCCCAATGTAACGGATGATCATCTTAGGCAAGTTTTTGGCCAATATGGGGAGTTAGTTCATGTTAAGATTCCAGCAGGCAAGCGTTGTGGGTTTGTTCAATATGCTGACAGGAGCTGTGCGGAAGAGGCGCTGAGGTCCTTAAATGGAACAACATTGGGTGGGCAGAGTGTTCGCCTCTCTTGGGGCCGGAGTCCTTCAAATAAACAGACTCAGGCAGATCCAAACCAGTGGAATGGTGCTGCTGGGTATTACGGATATGCTCAGGGGTACGAGAACTATGGATATGCTCCAGCTACTGCACAGGATCCCAACATGTACGGAAGCTATCCTGGGTACCCCAATTACCAACCACAGCAGCAGCAGCAGCAGCAGCTAGGAGGATATAGTTGA 1230 0.4846 MMQPGHGGMAPPTMGGQQQPPQQYPQQQQQQQQQQQHPYMMMPPQPQAPPMWAPSVQPPPQSLAAQPSSSDEVRTLWIGDLQFWMDENYLYNCFAHTGEVASVKVIRNKLTNQSEGYGFVEFFTRAAAERILQTFSGTIMPNGGQTYRLNWASFSSGEKRHDDTPDHTIFVGDLSADVTDYMLQEVFRARYSSVKGAKVVIDRATGRTKGYGFVRFGDENEQIRAMTEMQGVLCSSRPMRIGPATNKNPGTQPKASYQNPQGAQNENDPNNSTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQYADRSCAEEALRSLNGTTLGGQSVRLSWGRSPSNKQTQADPNQWNGAAGYYGYAQGYENYGYAPATAQDPNMYGSYPGYPNYQPQQQQQQQLGGYS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0473 409 MobiDBLite consensus disorder prediction 237 273 - -
Mibi03g0473 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 337 IPR000504 GO:0003723
Mibi03g0473 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 141 IPR000504 GO:0003723
Mibi03g0473 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 237 IPR000504 GO:0003723
Mibi03g0473 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 246 IPR000504 GO:0003723
Mibi03g0473 409 MobiDBLite consensus disorder prediction 1 69 - -
Mibi03g0473 409 Gene3D - 158 252 IPR012677 -
Mibi03g0473 409 FunFam Polyadenylate-binding protein RBP45C 251 377 - -
Mibi03g0473 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 154 IPR000504 GO:0003723
Mibi03g0473 409 MobiDBLite consensus disorder prediction 391 409 - -
Mibi03g0473 409 Gene3D - 12 157 IPR012677 -
Mibi03g0473 409 CDD RRM3_NGR1_NAM8_like 271 342 - -
Mibi03g0473 409 MobiDBLite consensus disorder prediction 15 41 - -
Mibi03g0473 409 MobiDBLite consensus disorder prediction 386 409 - -
Mibi03g0473 409 SMART rrm1_1 168 242 IPR000504 GO:0003723
Mibi03g0473 409 SMART rrm1_1 273 340 IPR000504 GO:0003723
Mibi03g0473 409 SMART rrm1_1 75 150 IPR000504 GO:0003723
Mibi03g0473 409 MobiDBLite consensus disorder prediction 241 273 - -
Mibi03g0473 409 FunFam Polyadenylate-binding protein RBP45C 159 250 - -
Mibi03g0473 409 MobiDBLite consensus disorder prediction 42 61 - -
Mibi03g0473 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 65 348 - -
Mibi03g0473 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 344 IPR000504 GO:0003723
Mibi03g0473 409 SUPERFAMILY RNA-binding domain, RBD 39 154 IPR035979 GO:0003676
Mibi03g0473 409 SUPERFAMILY RNA-binding domain, RBD 257 369 IPR035979 GO:0003676
Mibi03g0473 409 Gene3D - 253 353 IPR012677 -
Mibi03g0473 409 SUPERFAMILY RNA-binding domain, RBD 154 259 IPR035979 GO:0003676
Mibi03g0473 409 CDD RRM1_SECp43_like 75 155 - -
Mibi03g0473 409 CDD RRM2_SECp43_like 166 245 - -
Mibi03g0473 409 FunFam Polyadenylate-binding protein RBP45 11 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0473 Mibi-ChrMibi03 6224213 6227900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0473 75 351 Eukaryotic Initiation Factors Gene Family AT4G34110 27.305 1.49e-28 115