Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0446 ATGGCTTCTTCCCACCAATCTCTCCTCGACAAACCCAAAAAGTCAATTTCCAAAACCATTTGGCTTCTTCTCTCTCTAGCTGCTTTCATAGGCTTATCAGCCCTTGTTGCATCTCATCTTTTCACATCGTCTTCCTCCTCCTTCTTTAACCTCTCTCACCCTTATCATCGTCTTTGTGAACATGCCATTCACAAATCATCATGCCTTGCCCACATCTCTGAACTAACTCAAGCGTCAACCTTTACTACAGAATCCAACTTGCTTCAATCTTTCCTTATGAAAACCTCCGCACAAATCCAGAAAACTATGGACTCAACCAAAGCCATCAAATACAGAATCAACAACCCAAAACAGAACCAAGCCCTGCTTGTGTGTGAGGAACTTCTAGAAATGTCCCTTGGGAGAGTTTGGAACTCAACGGAAGCTCTCTCCGAGAAGACCACCAAATCCTACCAAGATGCTCACACATGGCTCAGCACTGTGCTCACCAACCACATCACTTGTTTGGATGAGTTAGAAGGATCAGCTAGAGCCCTTATAGAATCTGAGCTCAATGACTTAGTCTCAAGAGCCAGAACCTCCCTAGCCATTCTTGTTCATATTATGCCCTCTCAAGTTGATGCTATTCATGAGGAGCCTCTTAATGGTAAGTTTCCCTCATGGGTGACTGGTAAGGATAGGAAGCTTCTAGAAGCTTCTGGTAATGATATAAAGGCCAACGTTGTAGTGGCCCAGGATGGAAGTGGGAAGTTTAAGACTGTGAAGGAGGCTGTGGCTTCGGCACCAGATAATGGTAAGACAAGGTATGTGATATATGTGAAGAAGGGAACTTATAAGGAAAATGTTGAGATTGGATCAACGAAGAAGAATATAATGCTGGTCGGTGATGGTATGGATGCCACTATCATTACTGGAAGCTTGAATTTTGTCGATGGAACTCCCACGTTCAAAACTGCCACCGTCGCTGCGGCTGGGGATGGATTCATAGGGCAAGACATTTGGTTCCAAAACACGGCAGGCCCTCAGAAAGAACAAGCGGTGGCTCTCCGAGTCAATGGCGATCTCGCCGTCATAAACCGCTGCCGTATGGACGCCTTCCAAGACACTCTATACACCCACGCCAACAGGCAATTCTACCGTGACTGCTTCATCACCGGCACCATTGACTTCGTCTTCGGTAACGCCGCGGTCGTGTTCCAAAAGTGCAACTTCGTGGCCAGAAAGCCTGGGAACAACCAAAACAACATGGTGACAGCACAAGGACGTGAAGATCCAAACCAAAATACAGGAACTTCAATCCAACAATGTAACATAATACCGAGTTCTGATCTTAAGCCAGTGTCATTTTTGGATAGCCATATTGATGCAGCTGGGTGGGCCCCATGGGACACTAAGGAATCTACATTGAAGAATTTATATTATGGAGAGTATATGAACAAAGGAGCAGGTGCTGGTATTGCCAATAGAGTGAAGTGGCCTGGTTATCATGTGATTACAAGTGCGGCTGAGGCTAGTAAATTCACTGTGGCTCAGCTTATTCAAGGTGGGACTTGGTTGAAGAACACCGGGGTTGACTTCATTGAAGGGCTTTAG 1593 0.4576 MASSHQSLLDKPKKSISKTIWLLLSLAAFIGLSALVASHLFTSSSSSFFNLSHPYHRLCEHAIHKSSCLAHISELTQASTFTTESNLLQSFLMKTSAQIQKTMDSTKAIKYRINNPKQNQALLVCEELLEMSLGRVWNSTEALSEKTTKSYQDAHTWLSTVLTNHITCLDELEGSARALIESELNDLVSRARTSLAILVHIMPSQVDAIHEEPLNGKFPSWVTGKDRKLLEASGNDIKANVVVAQDGSGKFKTVKEAVASAPDNGKTRYVIYVKKGTYKENVEIGSTKKNIMLVGDGMDATIITGSLNFVDGTPTFKTATVAAAGDGFIGQDIWFQNTAGPQKEQAVALRVNGDLAVINRCRMDAFQDTLYTHANRQFYRDCFITGTIDFVFGNAAVVFQKCNFVARKPGNNQNNMVTAQGREDPNQNTGTSIQQCNIIPSSDLKPVSFLDSHIDAAGWAPWDTKESTLKNLYYGEYMNKGAGAGIANRVKWPGYHVITSAAEASKFTVAQLIQGGTWLKNTGVDFIEGL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0446 530 CDD PMEI-like_4 66 199 - -
Mibi03g0446 530 Pfam Plant invertase/pectin methylesterase inhibitor 57 189 IPR006501 GO:0004857
Mibi03g0446 530 Gene3D - 234 530 IPR012334 -
Mibi03g0446 530 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Mibi03g0446 530 FunFam Pectinesterase 234 449 - -
Mibi03g0446 530 SUPERFAMILY Pectin lyase-like 238 529 IPR011050 -
Mibi03g0446 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 202 IPR035513 -
Mibi03g0446 530 Pfam Pectinesterase 240 447 IPR000070 GO:0030599|GO:0042545
Mibi03g0446 530 Pfam Pectinesterase 448 515 IPR000070 GO:0030599|GO:0042545
Mibi03g0446 530 PANTHER PECTINESTERASE 36 520 - -
Mibi03g0446 530 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 177 IPR006501 GO:0004857
Mibi03g0446 530 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Mibi03g0446 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 197 IPR035513 -
Mibi03g0446 530 SMART PMEI_2 50 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0446 Mibi-ChrMibi03 5830420 5833151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0446 1 530 Carbohydrate Esterase AT1G11580 51.071 0.0 553