Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0437 ATGCAGTTTTTCAGTATTCGTTCAAAAGAAAACCCTAGCAGATCAAAATCTTCCAAGATGCAAATCTTTGTCAAGACCCTTACCGGAAAGACCATCACTCTCGAAGTTGAGAGCTCAGATACGATAGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCGGACCAGCAACGACTGATCTTTGCCGGAAAGCAGCTTGAGGACGGACGTACTCTTGCTGACTATAACATCCAAAAGGAATCAACTCTGCACCTTGTGCTCCGACTTCGTGGTGGCATGCAAATATTTGTTAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGAGTTCTGACACTATTGATAATGTTAAGGCAAAGATTCAGGACAAAGAGGGAATCCCACCAGACCAACAAAGGCTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACCCTGGCTGACTATAACATTCAGAAAGAGTCCACCCTCCACCTTGTGCTTCGTCTCCGTGGAGGAATGCAGATTTTTGTCAAGACCCTCACCGGGAAGACCATTACCTTGGAGGTTGAAAGCTCTGACACTATTGATAATGTTAAGGCAAAGATTCAGGACAAAGAGGGAATCCCACCAGACCAACAAAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGGCGTACCCTGGCTGACTATAACATCCAAAAGGAGTCCACTCTTCATCTTGTTCTGCGGCTCCGTGGAGGAATGCAAATTTTTGTCAAGACTCTGACTGGGAAGACCATTACCTTGGAGGTGGAAAGCTCTGACACTATTGATAATGTGAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAACAAAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGCCGGACGTTGGCTGACTATAACATCCAGAAAGAGTCCACCCTTCACCTTGTTCTGCGTCTCCGTGGTGGTATGCAGATCTTTGTGAAGACCTTGACAGGTAAAACCATCACCCTGGAGGTAGAGAGTTCAGATACGATTGACAATGTGAAGGCAAAAATTCAGGACAAAGAGGGAATCCCACCAGACCAGCAAAGGCTCATCTTCGCTGGTAAACAGCTTGAAGATGGCCGGACCTTGGCGGACTATAACATCCAGAAGGAGTCCACTCTTCACCTTGTCCTGCGTCTCCGTGGTGGCATGCAGATTTTTGTGAAGACCTTGACAGGCAAAACAATTACTCTAGAGGTGGAGAGTTCTGATACGATTGATAACGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCGGACCAGCAAAGATTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCCGACTACAACATCCAGAAGGAGTCCACACTTCATCTTGTTTTGCGTCTTCGCGGGGGATTCTGA 1431 0.4738 MQFFSIRSKENPSRSKSSKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0437 476 CDD Ubl_ubiquitin 324 399 - -
Mibi03g0437 476 FunFam Polyubiquitin 3 172 247 - -
Mibi03g0437 476 Pfam Ubiquitin family 22 93 IPR000626 GO:0005515
Mibi03g0437 476 Pfam Ubiquitin family 174 245 IPR000626 GO:0005515
Mibi03g0437 476 Pfam Ubiquitin family 402 473 IPR000626 GO:0005515
Mibi03g0437 476 Pfam Ubiquitin family 98 169 IPR000626 GO:0005515
Mibi03g0437 476 Pfam Ubiquitin family 250 321 IPR000626 GO:0005515
Mibi03g0437 476 Pfam Ubiquitin family 326 397 IPR000626 GO:0005515
Mibi03g0437 476 CDD Ubl_ubiquitin 172 247 - -
Mibi03g0437 476 ProSitePatterns Ubiquitin domain signature. 46 71 IPR019954 -
Mibi03g0437 476 SUPERFAMILY Ubiquitin-like 95 171 IPR029071 -
Mibi03g0437 476 SUPERFAMILY Ubiquitin-like 15 95 IPR029071 -
Mibi03g0437 476 Gene3D - 13 95 - -
Mibi03g0437 476 Gene3D - 248 323 - -
Mibi03g0437 476 Gene3D - 324 399 - -
Mibi03g0437 476 Gene3D - 172 247 - -
Mibi03g0437 476 Gene3D - 96 171 - -
Mibi03g0437 476 Gene3D - 400 476 - -
Mibi03g0437 476 CDD Ubl_ubiquitin 20 95 - -
Mibi03g0437 476 ProSitePatterns Ubiquitin domain signature. 426 451 IPR019954 -
Mibi03g0437 476 ProSiteProfiles Ubiquitin domain profile. 248 323 IPR000626 GO:0005515
Mibi03g0437 476 SUPERFAMILY Ubiquitin-like 170 247 IPR029071 -
Mibi03g0437 476 ProSiteProfiles Ubiquitin domain profile. 324 399 IPR000626 GO:0005515
Mibi03g0437 476 ProSiteProfiles Ubiquitin domain profile. 400 475 IPR000626 GO:0005515
Mibi03g0437 476 ProSitePatterns Ubiquitin domain signature. 350 375 IPR019954 -
Mibi03g0437 476 FunFam Polyubiquitin 3 96 171 - -
Mibi03g0437 476 FunFam Polyubiquitin 3 324 399 - -
Mibi03g0437 476 ProSitePatterns Ubiquitin domain signature. 198 223 IPR019954 -
Mibi03g0437 476 PRINTS Ubiquitin signature 51 71 IPR019956 -
Mibi03g0437 476 PRINTS Ubiquitin signature 72 93 IPR019956 -
Mibi03g0437 476 PRINTS Ubiquitin signature 30 50 IPR019956 -
Mibi03g0437 476 ProSiteProfiles Ubiquitin domain profile. 20 95 IPR000626 GO:0005515
Mibi03g0437 476 CDD Ubl_ubiquitin 400 475 - -
Mibi03g0437 476 ProSiteProfiles Ubiquitin domain profile. 96 171 IPR000626 GO:0005515
Mibi03g0437 476 ProSiteProfiles Ubiquitin domain profile. 172 247 IPR000626 GO:0005515
Mibi03g0437 476 ProSitePatterns Ubiquitin domain signature. 122 147 IPR019954 -
Mibi03g0437 476 SUPERFAMILY Ubiquitin-like 399 475 IPR029071 -
Mibi03g0437 476 CDD Ubl_ubiquitin 248 323 - -
Mibi03g0437 476 SMART ubq_7 96 167 IPR000626 GO:0005515
Mibi03g0437 476 SMART ubq_7 172 243 IPR000626 GO:0005515
Mibi03g0437 476 SMART ubq_7 248 319 IPR000626 GO:0005515
Mibi03g0437 476 SMART ubq_7 20 91 IPR000626 GO:0005515
Mibi03g0437 476 SMART ubq_7 324 395 IPR000626 GO:0005515
Mibi03g0437 476 SMART ubq_7 400 471 IPR000626 GO:0005515
Mibi03g0437 476 SUPERFAMILY Ubiquitin-like 323 399 IPR029071 -
Mibi03g0437 476 CDD Ubl_ubiquitin 96 171 - -
Mibi03g0437 476 FunFam Polyubiquitin 3 400 475 - -
Mibi03g0437 476 FunFam Polyubiquitin 3 20 95 - -
Mibi03g0437 476 PANTHER UBIQUITIN 96 175 - -
Mibi03g0437 476 FunFam Polyubiquitin 3 248 323 - -
Mibi03g0437 476 ProSitePatterns Ubiquitin domain signature. 274 299 IPR019954 -
Mibi03g0437 476 SUPERFAMILY Ubiquitin-like 246 323 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0437 Mibi-ChrMibi03 5758381 5760790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0437 20 96 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.98e-47 157