LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi03g0421	ATGGGAAAAAAGAAATGGAGAGAAGCTGGGAAAACTATCTCTTACACCCATATCGTATTCTACTTCTTCATGATCTTCATTCCAACCATAGCCATAGAAGATAAAACACCTCCTGTCTATCTCTACCATTTCTGCTCAACCAACGAAAACTTCACACTCAATAGTCCCTACCATTCCAACCTCAACACTCTCCTTTCCTCTCTATCATCCCACGCCGCCACCAGCGCTGCGGAATTCTACAACACCACCGTCACCGGCGGAGGCAGCGCAAATGTCGGCGACGCTGTCCACGGCCTCTTCTTGTGTCGTGGCGATGTCACGCGCCATACATGCAAAAACTGCGTCCAATTGGCGATCAAGAAAATCGCCACGCGCTGTCTTTATTCCAAAGAAGCCATCGTTTGGTATCATGAGTGCTTAGTAAGGTACTCAAATCGTTACATCTTCTCCGAGATGGAGGAGTGGCCGAGGTTTAAGGTTGTGAATTATAGCACGATTCCGAACTCGCCGGAGCAACGTGGCGTCGGGTGGGTGTTGGCGGACACGATGAACGAGGCGATAGCCGAGGCGGCAGCGGCGGACGGAGGGAAGAAGTTTGCGACAAGGGTGGGGGAATTCGAGGGTGAGAAGGTGTATATTTTGGTACAGTGCTCGCCGGACTTGACGACTGGAGATTGTCGGAGATGTCTGAGGGATATGATGGCGGATATTTCGTTGTGTTGCCTTGGAAGAGACGGTGGAATGGTTTTGTATCCAAGTTGTAGTCTCATGTTTTGTTCACGTCTCTTTTACAGAGAAGTTGAAGTTGTACACGCTCTGGCACCGGCGCGTGTGGACTCCGTTCCCATTGATGATGGTGGCAAAGGGCACTCAACACCCACAAGAGGCAGAAAAGTCGGATCACAGATCATTATGATGCTGGTCGTCCCGGTAGTTATTACAGTCTTGCTGTACAATTTTGTCATCTATTTATTACGAAGAAAGGCAAGGAAGAGATATGCCATTCTCAAAGAAAACTTTGGAACTGAATGTACTACTTTGGAGTCACTGCAATTCGATTTCGCGACAATTGAAGCTGCAACAAATAGGTTTTCAGTTCAGAACAGGATAGGTCAAGGAGGATTTGGAGAAGTTTACAAGGGTACTCTTTCTAATGGACAAAATATAGCTGTGAAGAGACTCTCTGCAAGCTCCGAGCAAGGCATCATGGAATTTAAGAATGAGATTTTATTAATAGCAAAACTTCAACATAGAAATCTAGTAACATTGTTGGGATTTTGCTTGCAAGAGCATGAGAAGATACTTGTTTATGAATTCGTTCCCAATAAAAGCCTTGACTACTTTCTCTTTGGTTTTGGTTATATGCCTCCTGAATATGTTAAATTTGGAAGATACTCAGAGAAATTAGATGTTTTTAGTTTTGGAGTCATGATGTTGGAGGTTATAAGTGGGCAGAAAAATTCTCGTTCCTATGAATTAGCCATAACTGATGGCCTCCTAGCTTATGCTTGGAACCAATGGAGGTGCGAAGAGACACCATTAGAAATAATGGATCCAAAGTTGAAAGAATGTTGTTGTGAAACAGAAGTGATAAAGTGCATTCAAATAGGGTTATTGTGTGTTCAAGAGAAAGCAGAGGACAGGCCTTCTATGTCAAGAGTTGTTACATATTTAAGTAATCTTTCATCAGTAGAATTACCATTTCCTCGTAAACCCGCATTTTATGTACATGGTAGCATTATGGAGGGAAATCCTGGTCATCCATCTGCCAACAATTCCATTTTATCTTCTATAAATGAAATGTCTATAACTACATCTTTTCCTCGTTAG	1830	0.435	MGKKKWREAGKTISYTHIVFYFFMIFIPTIAIEDKTPPVYLYHFCSTNENFTLNSPYHSNLNTLLSSLSSHAATSAAEFYNTTVTGGGSANVGDAVHGLFLCRGDVTRHTCKNCVQLAIKKIATRCLYSKEAIVWYHECLVRYSNRYIFSEMEEWPRFKVVNYSTIPNSPEQRGVGWVLADTMNEAIAEAAAADGGKKFATRVGEFEGEKVYILVQCSPDLTTGDCRRCLRDMMADISLCCLGRDGGMVLYPSCSLMFCSRLFYREVEVVHALAPARVDSVPIDDGGKGHSTPTRGRKVGSQIIMMLVVPVVITVLLYNFVIYLLRRKARKRYAILKENFGTECTTLESLQFDFATIEAATNRFSVQNRIGQGGFGEVYKGTLSNGQNIAVKRLSASSEQGIMEFKNEILLIAKLQHRNLVTLLGFCLQEHEKILVYEFVPNKSLDYFLFGFGYMPPEYVKFGRYSEKLDVFSFGVMMLEVISGQKNSRSYELAITDGLLAYAWNQWRCEETPLEIMDPKLKECCCETEVIKCIQIGLLCVQEKAEDRPSMSRVVTYLSNLSSVELPFPRKPAFYVHGSIMEGNPGHPSANNSILSSINEMSITTSFPR	609

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi03g0421	609	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	38	147	-	-
	Mibi03g0421	609	Gene3D	Phosphorylase Kinase; domain 1	327	438	-	-
	Mibi03g0421	609	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	325	439	-	-
	Mibi03g0421	609	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	47	451	-	-
	Mibi03g0421	609	Gene3D	-	38	147	IPR038408	-
	Mibi03g0421	609	Gene3D	-	160	263	IPR038408	-
	Mibi03g0421	609	SUPERFAMILY	Protein kinase-like (PK-like)	349	577	IPR011009	-
	Mibi03g0421	609	ProSiteProfiles	Gnk2-homologous domain profile.	39	148	IPR002902	-
	Mibi03g0421	609	ProSiteProfiles	Gnk2-homologous domain profile.	154	263	IPR002902	-
	Mibi03g0421	609	Gene3D	Transferase(Phosphotransferase) domain 1	439	566	-	-
	Mibi03g0421	609	Pfam	Protein tyrosine and serine/threonine kinase	366	449	IPR001245	GO:0004672\|GO:0006468
	Mibi03g0421	609	Pfam	Protein tyrosine and serine/threonine kinase	454	557	IPR001245	GO:0004672\|GO:0006468
	Mibi03g0421	609	ProSitePatterns	Protein kinases ATP-binding region signature.	370	392	IPR017441	GO:0005524
	Mibi03g0421	609	Pfam	Salt stress response/antifungal	184	258	IPR002902	-
	Mibi03g0421	609	Pfam	Salt stress response/antifungal	45	145	IPR002902	-
	Mibi03g0421	609	ProSiteProfiles	Protein kinase domain profile.	364	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi03g0421	Mibi-ChrMibi03	5386010	5391103	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi03g0421	452	609	Receptor kinase-like Gene Family	AT4G05200	38.788	1.73e-30	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mibi03g0421		PK_Tyr_Ser-Thr	9.3e-08	CL0016