Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0379 ATGAAGGAGATAGACAAGGACTCAAACAAACAAGTCACCTTCTCAAAAAGACGTACGGGACTCTTCAAGAAAGCAAGTGAGCTTTGCGTTTTATGTAACGCTCAGATAGCCATAATTGTCTTCTCGCCGGCCGACAAGGCCTTTTGCTTCGGCCAACCGAACGTGGAAGCCGTCCTCCGCCGCTACCAAAGCGAAGGAACAATGGCGGCTCGTGAAGTTCATTCAGTGTCATATGAAGAACTTAATAGGCAGCATGAGGAAGCAGTTAGGGCATTGGAGATGGAGAAGCAACAATTGGAGGAGATTGAGAATGTGGGAAAGGTAGTGAATAGAGGGAATTGGAAGGTGGCTGAGAAGGCTGATGAGTTCATGAGGATTTCGATAATGCCAGCGTTTTATGGTGAAAGTTCTTTGGGTGGTTTTGCCAACCAATTTGGTGGTGGTGGTGGTGGGCTTGTTGCATATCATGACAAGTTTGAGTATTGA 486 0.465 MKEIDKDSNKQVTFSKRRTGLFKKASELCVLCNAQIAIIVFSPADKAFCFGQPNVEAVLRRYQSEGTMAAREVHSVSYEELNRQHEEAVRALEMEKQQLEEIENVGKVVNRGNWKVAEKADEFMRISIMPAFYGESSLGGFANQFGGGGGGLVAYHDKFEY 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0379 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 50 IPR002100 GO:0003677|GO:0046983
Mibi03g0379 161 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Mibi03g0379 161 FunFam Agamous-like MADS-box protein AGL62 6 72 - -
Mibi03g0379 161 SUPERFAMILY SRF-like 1 70 IPR036879 GO:0003677|GO:0046983
Mibi03g0379 161 PANTHER MADS BOX PROTEIN 1 102 - -
Mibi03g0379 161 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Mibi03g0379 161 Coils Coil 75 105 - -
Mibi03g0379 161 Gene3D - 7 76 IPR036879 GO:0003677|GO:0046983
Mibi03g0379 161 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Mibi03g0379 161 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0379 Mibi-ChrMibi03 4289549 4290113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0379 1 114 Type I MADS-box Gene Family AT2G24840 48.361 2.37e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi03g0379 SRF-TF 3.8e-23 No_clan