Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0378 ATGGATCTCATGATGAAGCAACAAACCAAGAAAATCACAACCACCGGACGCAAGAAGATTGAGATAAAGGAGATAGACAAGGACTCCAACAAGCAAGTCACCTTCTCAAAAAGACGTACGGGACTCTTCAAGAAAGCCAGTGAGCTTTGTGTTTTATGTAACGCTCAGATAGCCATAATTGTCTTCTCGCCAGCCGACAAGGCCTTTTGCTTCGGCCAACCGAACGTGGAAGCCGTCCTCCGCCGCTACCAAAGCGAAGGAACAATGGCGGCTCGTGAAGTTCATTCAGTGTCATATGAAGAACTTAATAGGCAACATGAGGAAGCAGTTAGGGCATTGGAGATGGAGAAGCAACAATTGGAGGAGATTGAGAATGTGGGAAAGGTAGTGAACAGAGGGAATTGGTGGGATGAATCTATTGATGAGATGGATTTGGATCAATTGGAGCAATATTTAGTGGCCATGCATGAGTTAAGAAGGAAGGTGGCTGAGAAGGCTGATGAGTTCATGAGGATTTCGATGATGCCAGCGTTTTATGGTGAAAGTTCTTTGGGTGGTTTTCTTGATGGAGGTGTGGGCGGTGGCGGTGGTGGCAGTTATGGTGGTTTTGCTAACCAGTTGGGTGGCGGTGGCGGTGGTCTTGTTGCTTATCATGACAAGTTTGAGTATTAG 672 0.4658 MDLMMKQQTKKITTTGRKKIEIKEIDKDSNKQVTFSKRRTGLFKKASELCVLCNAQIAIIVFSPADKAFCFGQPNVEAVLRRYQSEGTMAAREVHSVSYEELNRQHEEAVRALEMEKQQLEEIENVGKVVNRGNWWDESIDEMDLDQLEQYLVAMHELRRKVAEKADEFMRISMMPAFYGESSLGGFLDGGVGGGGGGSYGGFANQLGGGGGGLVAYHDKFEY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0378 223 FunFam Agamous-like MADS-box protein AGL62 27 93 - -
Mibi03g0378 223 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Mibi03g0378 223 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Mibi03g0378 223 Coils Coil 96 126 - -
Mibi03g0378 223 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Mibi03g0378 223 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Mibi03g0378 223 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Mibi03g0378 223 SUPERFAMILY SRF-like 16 91 IPR036879 GO:0003677|GO:0046983
Mibi03g0378 223 Coils Coil 148 168 - -
Mibi03g0378 223 Gene3D - 28 96 IPR036879 GO:0003677|GO:0046983
Mibi03g0378 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 71 IPR002100 GO:0003677|GO:0046983
Mibi03g0378 223 CDD MADS_MEF2_like 16 84 IPR033896 GO:0000977|GO:0045944
Mibi03g0378 223 PANTHER MADS BOX PROTEIN 17 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0378 Mibi-ChrMibi03 4271192 4271863 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0378 14 205 Type I MADS-box Gene Family AT2G24840 39.614 2.76e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi03g0378 SRF-TF 6.9e-23 No_clan