Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0377 ATGGCGATGAACAACAAAAAGTGTAGCTCAGGTCGTCAAAAGATACCCATCCAGAAAATACCAAAGAAAAGTAACTTACAAGTTACATTCTCCAAGCGTCGTTCAGGATTGTTCAAAAAAGCTAGTGAACTTTGTACACTTTGTGGGGTAGAAATCGCCATGATAGTATTCTCTCCAGCTAATAAAGCTTTCTCATTTGGCCACCCAGGAGTTGAATCCATAATTGACCGTTACCTATTATCAATAAAAAAATCTTCTGACTCACCAACGCCATCATCAATCACTACTAGTAGTAGTGTTCATAGGAATTCTAACGTTTGTAATCTTAATATGCAGTTAACACAGATTCTTAACCTGGTGGAGATGGAGAAGAAGAGAGGTGAAGAGCTTGATCGTACGAGAAAAGTGAGGGGAAGAGAGTTTTGGTGGGAGAATCCAATTGATGAGATTGATTCAGTAGATCAGTTACAACAATTGAGGATTTCAATGGAGGAACTTAAGAAGGATGTTTCAAGGCAAACGAGTTTTGTGTCTTGTTCTTCATCATCACAGATTAATAATATTAATGTTGGGGGAGAATATTATTATGGCGGATCATTCTTCGGACGTTACGACGACGACGACGACGTGTTTGACAACAAATTATTATTCTTAGGTGGTGGTGCTCAGAATAATATTCATAATGCTGCTGGTAATAATAATTATTCGTCTAGTGCTATTCCTGATGATCATTATGCCTTTAATAACCTTGTTTATCAAAACCATGACATGGGGATGTTTAAGTTTACTTCTCAGTTCTGA 801 0.3745 MAMNNKKCSSGRQKIPIQKIPKKSNLQVTFSKRRSGLFKKASELCTLCGVEIAMIVFSPANKAFSFGHPGVESIIDRYLLSIKKSSDSPTPSSITTSSSVHRNSNVCNLNMQLTQILNLVEMEKKRGEELDRTRKVRGREFWWENPIDEIDSVDQLQQLRISMEELKKDVSRQTSFVSCSSSSQINNINVGGEYYYGGSFFGRYDDDDDVFDNKLLFLGGGAQNNIHNAAGNNNYSSSAIPDDHYAFNNLVYQNHDMGMFKFTSQF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0377 266 SUPERFAMILY SRF-like 11 80 IPR036879 GO:0003677|GO:0046983
Mibi03g0377 266 Coils Coil 153 173 - -
Mibi03g0377 266 CDD MADS_MEF2_like 11 79 IPR033896 GO:0000977|GO:0045944
Mibi03g0377 266 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Mibi03g0377 266 Gene3D - 22 90 IPR036879 GO:0003677|GO:0046983
Mibi03g0377 266 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Mibi03g0377 266 FunFam Agamous-like MADS-box protein AGL62 22 88 - -
Mibi03g0377 266 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Mibi03g0377 266 Gene3D - 95 190 - -
Mibi03g0377 266 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Mibi03g0377 266 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Mibi03g0377 266 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Mibi03g0377 266 PANTHER MADS BOX PROTEIN 12 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0377 Mibi-ChrMibi03 4253715 4254515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0377 9 170 Type I MADS-box Gene Family AT2G24840 52.907 2.29e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi03g0377 SRF-TF 6.3e-24 No_clan