Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0376 ATGTCAACTTCAAGGAGGAGCAAGGGTCGCCAAAAGATTGAGATGAAGAAGATGACTAATGAGAGTAACTTGCAGGTAACATTCTCAAAGCGAAGAACTGGGCTTTTTAAGAAAGCTAGTGAGCTTTGTACTCTTTGTGGTGCTGAGGTTGCTCTTATTGTCTTCTCACCTGGCGAGAAGGTGTTCTCCTTCGGCCACCCCACCGTGGACACGGTGGTGGACCGGTTCCTCACGCGGGCCCCACCGCCGGTGCAGGACTCCGGCACCATGCAGCTCATCGAGGCTCACAGGAATGCCAACGTTCGTGACCTTATTGCCCAGTTCACTCAAGTTTCTGCCCAGCTTGATGCTGAGAAGAAGCGAAATGATGAATTGAATCATATGCGAAGGGCCACTCAAGGTCAGTGCTGGTGGGCAGCGCCAATAGAAGAGATGACAAGGGCACAACTTGAGGAGTTCAAGTTGGCATTGGAGGAGCTAAAGAGGAGTGTAACAAGGCAGGCTGATAGGATGGTGCTCATTCAGAGTGCAACTAATAACTCCTCTAATCAGTTTTTGGTCGGCGGTTCTTCTTCCAACACGGTGGCTCCACCGCCTCATCATCAGGTGTTTCAGCCGCCGCCGCCGGCGGTGGGTCCAAACCCGGCTGAGTTTGATGGCAACATGGTGCCACCACACCATGGATTTGGTGGACCACCTCCAGGGTTTTATTGA 714 0.5224 MSTSRRSKGRQKIEMKKMTNESNLQVTFSKRRTGLFKKASELCTLCGAEVALIVFSPGEKVFSFGHPTVDTVVDRFLTRAPPPVQDSGTMQLIEAHRNANVRDLIAQFTQVSAQLDAEKKRNDELNHMRRATQGQCWWAAPIEEMTRAQLEEFKLALEELKRSVTRQADRMVLIQSATNNSSNQFLVGGSSSNTVAPPPHHQVFQPPPPAVGPNPAEFDGNMVPPHHGFGGPPPGFY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0376 237 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Mibi03g0376 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mibi03g0376 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mibi03g0376 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mibi03g0376 237 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Mibi03g0376 237 Gene3D - 88 187 - -
Mibi03g0376 237 Coils Coil 143 170 - -
Mibi03g0376 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mibi03g0376 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mibi03g0376 237 Gene3D - 20 84 IPR036879 GO:0003677|GO:0046983
Mibi03g0376 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mibi03g0376 237 PANTHER MADS BOX PROTEIN 10 167 - -
Mibi03g0376 237 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0376 Mibi-ChrMibi03 4244199 4245689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0376 5 193 Type I MADS-box Gene Family AT5G60440 58.421 1.36e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi03g0376 SRF-TF 8.6e-25 No_clan