Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0342 ATGGCTTTGGAAGCTCTTAACTCTCCAACTACAGCCCCAACTCCTTTCACCTTCAAGCATGAGCAACAACAAGAACAAGAAGAGGTTGATCATCTTCAATGGGCAAAAGGCAAGCGATCAAAACGACCACGTTTTGATGACCCCAACAACCCTCCTTCTGAAGATGAATACCTAGCTCTCTGTCTCATCATGCTCGCCCACAGCGGCCAAAACAACACCACCACCTCCGCCGCCGCCGCCACGTCATCACCGCCGCCACCTCCTCCTCCTTCTTCCTCCCTCAAACTCTCTCACAGATGCACAGTCTGCAACAAAGCCTTCTCTTCTTACCAAGCTCTCGGCGGCCACAAGGCCAGCCACCGTAAGTCCTCATCGGAATCCGCAGCCGCCGCCGCCGACACCGCCGCCGCAGCCGCATCCACCTCCGGCGCCGGAAGGACTCACGAGTGTTCCATATGTCACAAGGTTTTCCCTACTGGTCAGGCTTTGGGTGGGCATAAGAGGTGTCACTACGACGGCGGCAGCTCCAACAGCGGCGGCGCCGGCGCCGCCGTGTCGTCGGAGGGAGGTGGCGCTTCTACCGTCAGCCTACGTGGGTTCGACTTGAACCTGCCGGCGACGCCGCTGGAGTTGTCGCCGCCGGCCGTCGGAGTTGAGGAAGAGGTGGAGAGTCCGTTGCCGGTGGGGGTCGCCGGAAAAAAGAGAGGGCGTGTGGTTTTTGGTGGTGAAGAAGAAGAAGAAGAGGATGTGAAGCCTTTGTTGTTACAAAGTTAA 774 0.5788 MALEALNSPTTAPTPFTFKHEQQQEQEEVDHLQWAKGKRSKRPRFDDPNNPPSEDEYLALCLIMLAHSGQNNTTTSAAAATSSPPPPPPPSSSLKLSHRCTVCNKAFSSYQALGGHKASHRKSSSESAAAAADTAAAAASTSGAGRTHECSICHKVFPTGQALGGHKRCHYDGGSSNSGGAGAAVSSEGGGASTVSLRGFDLNLPATPLELSPPAVGVEEEVESPLPVGVAGKKRGRVVFGGEEEEEEDVKPLLLQS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0342 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 170 IPR013087 -
Mibi03g0342 257 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 36 207 IPR044653 GO:0003700
Mibi03g0342 257 SUPERFAMILY beta-beta-alpha zinc fingers 98 170 IPR036236 -
Mibi03g0342 257 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Mibi03g0342 257 MobiDBLite consensus disorder prediction 72 96 - -
Mibi03g0342 257 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Mibi03g0342 257 MobiDBLite consensus disorder prediction 1 53 - -
Mibi03g0342 257 Gene3D Classic Zinc Finger 96 170 - -
Mibi03g0342 257 Pfam C2H2-type zinc finger 148 172 - -
Mibi03g0342 257 Pfam C2H2-type zinc finger 98 122 - -
Mibi03g0342 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Mibi03g0342 257 MobiDBLite consensus disorder prediction 21 51 - -
Mibi03g0342 257 SMART c2h2final6 98 120 IPR013087 -
Mibi03g0342 257 SMART c2h2final6 148 170 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0342 Mibi-ChrMibi03 3824061 3824834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0342 1 227 C2H2 Transcription Factor Family AT1G27730 45.992 2.79e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi03g0342 zf-C2H2_6 7e-13 CL0361