Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mibi03g0291 | ATGGCGCAGGTTCAACTTCAACCTCAGAATGCAATTCCTGGGACTAACGGTGCTGCCGCCGGCGGCGGCCAGTTTGGTGCTTCGTCGCTTTATGTCGGAGATCTTGAAATGAATGTCACGGATTCACAGCTATATGACATATTTAATCAGATTGGTCAGGTTGTGTCTGTTAGGGTTTGCAGGGATTTGAGTACCCGGAGGTCACTTGGATATGGCTATGTCAATTTTGGCAACGCCCAAGATGCTGCCAAGGCAATGGATATGCTGAACTTCACTCCTCTGAATAACAAGCCCATCCGTATCATGTATTCACATCGCGATCCCAGTATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTGGACAAGGCAATTGACCACAAAGCATTACATGACACCTTTTCTGCATTTGGGAATATCCTCTCGTGCAAGGTAGCCACAGACCCATCTGGCCAATCAAAAGGCTATGGCTTTGTTCAATTTGAGAATGAGGAGTCTGCTCAGAAGGCCATAGAGAAGCTTAATGGTATGCTGTTGAACGATAAACAAGTATATGTTGGGCCCTTCCTTCGCAAGCAAGAAAGAGACAGTGCAGTGGACAAGACAAGATTCAACAATGTTTTTGTGAAGAACCTATCAGAATCAACCTCTGATGAAGATTTGAAGAAGACTTTTGGTGAATTTGGAACAATTACTAGTGCTGTGGTGATGAGGGATGGGGATGGTAAGTCAAAGTGCTTTGGATTTGTTAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCCCTTAATGGGAAAAAAGTTGATGAAAAGGAATGGTATGTTGGGAAAGCTCAAAAGAAATCTGAAAGGGAACTTGAGTTGAAACATCGGTTTGAACAGAGCATGAAAGAAGTGGCAGATAAATATCAAGGGGCTAATTTATATGTCAAAAATTTAGATGACAGCATTAGTGATGAGAAACTTAAGGAGATGTTCTCTCCATATGGAACCATTACCTCATGCAAGGTCATGAGAGATACCAATGGAATAAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTGCTGATGAGGCATCTCGAGCACTCTTGGAGATGAATGGAAAAATGGTGGCAAGCAAACCTCTGTATGTTGCTCTGGCCCAACGAAAAGAGGATAGAAGAGCTAGATTGCAGGCTCAGTTTTCTCAAATGCGGCCTGTTCCAATGGCACCTTCTGTTGCTCCTCGTATGCCAATGTACCCTCCTGGTGGTCCTGGTATGGGACAACAAATATTTTATGGTCAAGGTCCTCCTGCTATAATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAGTTAGTGCCTGGCATGAGGCCTGGTGGGGGTCCTATGCCAAATTTCTTCATGCCTATGGTTCAGCAGGGACAGCAGGGTCAGCGTCCTGGTGGAAGACGTGCAGGGGCAGTGCAGCAGAACCAGCAGCCTGTTCCACTTATGCAGCAGCAGATGCTTCCGAGGGGACGAGTCTACCGCTATCCTCCTGGTAGGGGTGGCCTGCCTGATGGTCCAATGCCTGGTGTTGCTGGAGGTATGTTTTCTGTCCCATATGATGTGGGTGGAATGCCGCTGCGTGAGACAGGATTATCCCAGCAAATTCCTATTGGGGCCTTGGCTTCTGCCCTGGCAAATGCCTCTCCCGAACAGCAAAGGACGATGTTAGGCGAGAATCTCTATCCTCTTGTGGAACAGTTGGAACCTGATAATTCCGCTAAAGTGACTGGCATGCTTCTGGAGATGGACCAGACCGAGGTTCTACACTTGCTCGAGTCACCGGAAGCCCTGAAAGCAAAAGTCGCTGAGGCAATGGATGTCCTGAGGAATGTGCAGCAGCAGCAGGCTGGTGGTGCCGTAGATCAGTTGGCCTCACTGTCGCTTAATGACAACCTTGTTTCTTGA | 1950 | 0.4692 | MAQVQLQPQNAIPGTNGAAAGGGQFGASSLYVGDLEMNVTDSQLYDIFNQIGQVVSVRVCRDLSTRRSLGYGYVNFGNAQDAAKAMDMLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFENEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDSAVDKTRFNNVFVKNLSESTSDEDLKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKVDEKEWYVGKAQKKSERELELKHRFEQSMKEVADKYQGANLYVKNLDDSISDEKLKEMFSPYGTITSCKVMRDTNGISRGSGFVAFSTADEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVPMAPSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRAGAVQQNQQPVPLMQQQMLPRGRVYRYPPGRGGLPDGPMPGVAGGMFSVPYDVGGMPLRETGLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNSAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVQQQQAGGAVDQLASLSLNDNLVS | 649 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mibi03g0291 | 649 | CDD | RRM1_I_PABPs | 29 | 108 | - | - | |
Mibi03g0291 | 649 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 197 | IPR035979 | GO:0003676 | |
Mibi03g0291 | 649 | CDD | RRM3_I_PABPs | 206 | 285 | - | - | |
Mibi03g0291 | 649 | Gene3D | - | 23 | 117 | IPR012677 | - | |
Mibi03g0291 | 649 | SUPERFAMILY | PABC (PABP) domain | 491 | 641 | IPR036053 | GO:0003723 | |
Mibi03g0291 | 649 | FunFam | Polyadenylate-binding protein | 547 | 629 | - | - | |
Mibi03g0291 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 284 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | FunFam | Polyadenylate-binding protein | 198 | 292 | - | - | |
Mibi03g0291 | 649 | FunFam | Polyadenylate-binding protein | 293 | 398 | - | - | |
Mibi03g0291 | 649 | PANTHER | RNA BINDING PROTEIN | 29 | 90 | - | - | |
Mibi03g0291 | 649 | Gene3D | - | 192 | 291 | IPR012677 | - | |
Mibi03g0291 | 649 | Gene3D | - | 292 | 396 | IPR012677 | - | |
Mibi03g0291 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 28 | 106 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 310 | 387 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | Gene3D | - | 118 | 189 | IPR012677 | - | |
Mibi03g0291 | 649 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 28 | 624 | IPR006515 | GO:0003723 | |
Mibi03g0291 | 649 | Gene3D | - | 547 | 630 | - | - | |
Mibi03g0291 | 649 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 551 | 628 | IPR002004 | GO:0003723 | |
Mibi03g0291 | 649 | SUPERFAMILY | RNA-binding domain, RBD | 207 | 390 | IPR035979 | GO:0003676 | |
Mibi03g0291 | 649 | SMART | poly_2 | 563 | 626 | IPR002004 | GO:0003723 | |
Mibi03g0291 | 649 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 209 | 277 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 30 | 100 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 118 | 186 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 312 | 380 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | SMART | rrm1_1 | 208 | 280 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | SMART | rrm1_1 | 117 | 189 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | SMART | rrm1_1 | 29 | 102 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | SMART | rrm1_1 | 311 | 383 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 188 | IPR000504 | GO:0003723 | |
Mibi03g0291 | 649 | FunFam | Polyadenylate-binding protein | 114 | 197 | - | - | |
Mibi03g0291 | 649 | FunFam | Polyadenylate-binding protein | 15 | 113 | - | - | |
Mibi03g0291 | 649 | SMART | rrm2_1 | 29 | 102 | IPR003954 | GO:0003676 | |
Mibi03g0291 | 649 | SMART | rrm2_1 | 208 | 280 | IPR003954 | GO:0003676 | |
Mibi03g0291 | 649 | SMART | rrm2_1 | 117 | 189 | IPR003954 | GO:0003676 | |
Mibi03g0291 | 649 | SMART | rrm2_1 | 311 | 383 | IPR003954 | GO:0003676 | |
Mibi03g0291 | 649 | Pfam | Poly-adenylate binding protein, unique domain | 559 | 623 | IPR002004 | GO:0003723 | |
Mibi03g0291 | 649 | CDD | RRM4_I_PABPs | 309 | 387 | - | - | |
Mibi03g0291 | 649 | CDD | RRM2_I_PABPs | 114 | 190 | IPR045305 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mibi03g0291 | Mibi-ChrMibi03 | 3290418 | 3294770 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mibi03g0291 | 1 | 644 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 72.171 | 0.0 | 917 |