Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0291 ATGGCGCAGGTTCAACTTCAACCTCAGAATGCAATTCCTGGGACTAACGGTGCTGCCGCCGGCGGCGGCCAGTTTGGTGCTTCGTCGCTTTATGTCGGAGATCTTGAAATGAATGTCACGGATTCACAGCTATATGACATATTTAATCAGATTGGTCAGGTTGTGTCTGTTAGGGTTTGCAGGGATTTGAGTACCCGGAGGTCACTTGGATATGGCTATGTCAATTTTGGCAACGCCCAAGATGCTGCCAAGGCAATGGATATGCTGAACTTCACTCCTCTGAATAACAAGCCCATCCGTATCATGTATTCACATCGCGATCCCAGTATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTGGACAAGGCAATTGACCACAAAGCATTACATGACACCTTTTCTGCATTTGGGAATATCCTCTCGTGCAAGGTAGCCACAGACCCATCTGGCCAATCAAAAGGCTATGGCTTTGTTCAATTTGAGAATGAGGAGTCTGCTCAGAAGGCCATAGAGAAGCTTAATGGTATGCTGTTGAACGATAAACAAGTATATGTTGGGCCCTTCCTTCGCAAGCAAGAAAGAGACAGTGCAGTGGACAAGACAAGATTCAACAATGTTTTTGTGAAGAACCTATCAGAATCAACCTCTGATGAAGATTTGAAGAAGACTTTTGGTGAATTTGGAACAATTACTAGTGCTGTGGTGATGAGGGATGGGGATGGTAAGTCAAAGTGCTTTGGATTTGTTAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCCCTTAATGGGAAAAAAGTTGATGAAAAGGAATGGTATGTTGGGAAAGCTCAAAAGAAATCTGAAAGGGAACTTGAGTTGAAACATCGGTTTGAACAGAGCATGAAAGAAGTGGCAGATAAATATCAAGGGGCTAATTTATATGTCAAAAATTTAGATGACAGCATTAGTGATGAGAAACTTAAGGAGATGTTCTCTCCATATGGAACCATTACCTCATGCAAGGTCATGAGAGATACCAATGGAATAAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTGCTGATGAGGCATCTCGAGCACTCTTGGAGATGAATGGAAAAATGGTGGCAAGCAAACCTCTGTATGTTGCTCTGGCCCAACGAAAAGAGGATAGAAGAGCTAGATTGCAGGCTCAGTTTTCTCAAATGCGGCCTGTTCCAATGGCACCTTCTGTTGCTCCTCGTATGCCAATGTACCCTCCTGGTGGTCCTGGTATGGGACAACAAATATTTTATGGTCAAGGTCCTCCTGCTATAATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAGTTAGTGCCTGGCATGAGGCCTGGTGGGGGTCCTATGCCAAATTTCTTCATGCCTATGGTTCAGCAGGGACAGCAGGGTCAGCGTCCTGGTGGAAGACGTGCAGGGGCAGTGCAGCAGAACCAGCAGCCTGTTCCACTTATGCAGCAGCAGATGCTTCCGAGGGGACGAGTCTACCGCTATCCTCCTGGTAGGGGTGGCCTGCCTGATGGTCCAATGCCTGGTGTTGCTGGAGGTATGTTTTCTGTCCCATATGATGTGGGTGGAATGCCGCTGCGTGAGACAGGATTATCCCAGCAAATTCCTATTGGGGCCTTGGCTTCTGCCCTGGCAAATGCCTCTCCCGAACAGCAAAGGACGATGTTAGGCGAGAATCTCTATCCTCTTGTGGAACAGTTGGAACCTGATAATTCCGCTAAAGTGACTGGCATGCTTCTGGAGATGGACCAGACCGAGGTTCTACACTTGCTCGAGTCACCGGAAGCCCTGAAAGCAAAAGTCGCTGAGGCAATGGATGTCCTGAGGAATGTGCAGCAGCAGCAGGCTGGTGGTGCCGTAGATCAGTTGGCCTCACTGTCGCTTAATGACAACCTTGTTTCTTGA 1950 0.4692 MAQVQLQPQNAIPGTNGAAAGGGQFGASSLYVGDLEMNVTDSQLYDIFNQIGQVVSVRVCRDLSTRRSLGYGYVNFGNAQDAAKAMDMLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFENEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDSAVDKTRFNNVFVKNLSESTSDEDLKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKVDEKEWYVGKAQKKSERELELKHRFEQSMKEVADKYQGANLYVKNLDDSISDEKLKEMFSPYGTITSCKVMRDTNGISRGSGFVAFSTADEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVPMAPSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRAGAVQQNQQPVPLMQQQMLPRGRVYRYPPGRGGLPDGPMPGVAGGMFSVPYDVGGMPLRETGLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNSAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVQQQQAGGAVDQLASLSLNDNLVS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0291 649 CDD RRM1_I_PABPs 29 108 - -
Mibi03g0291 649 SUPERFAMILY RNA-binding domain, RBD 29 197 IPR035979 GO:0003676
Mibi03g0291 649 CDD RRM3_I_PABPs 206 285 - -
Mibi03g0291 649 Gene3D - 23 117 IPR012677 -
Mibi03g0291 649 SUPERFAMILY PABC (PABP) domain 491 641 IPR036053 GO:0003723
Mibi03g0291 649 FunFam Polyadenylate-binding protein 547 629 - -
Mibi03g0291 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Mibi03g0291 649 FunFam Polyadenylate-binding protein 198 292 - -
Mibi03g0291 649 FunFam Polyadenylate-binding protein 293 398 - -
Mibi03g0291 649 PANTHER RNA BINDING PROTEIN 29 90 - -
Mibi03g0291 649 Gene3D - 192 291 IPR012677 -
Mibi03g0291 649 Gene3D - 292 396 IPR012677 -
Mibi03g0291 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Mibi03g0291 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Mibi03g0291 649 Gene3D - 118 189 IPR012677 -
Mibi03g0291 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 28 624 IPR006515 GO:0003723
Mibi03g0291 649 Gene3D - 547 630 - -
Mibi03g0291 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Mibi03g0291 649 SUPERFAMILY RNA-binding domain, RBD 207 390 IPR035979 GO:0003676
Mibi03g0291 649 SMART poly_2 563 626 IPR002004 GO:0003723
Mibi03g0291 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Mibi03g0291 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Mibi03g0291 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Mibi03g0291 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Mibi03g0291 649 SMART rrm1_1 208 280 IPR000504 GO:0003723
Mibi03g0291 649 SMART rrm1_1 117 189 IPR000504 GO:0003723
Mibi03g0291 649 SMART rrm1_1 29 102 IPR000504 GO:0003723
Mibi03g0291 649 SMART rrm1_1 311 383 IPR000504 GO:0003723
Mibi03g0291 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Mibi03g0291 649 FunFam Polyadenylate-binding protein 114 197 - -
Mibi03g0291 649 FunFam Polyadenylate-binding protein 15 113 - -
Mibi03g0291 649 SMART rrm2_1 29 102 IPR003954 GO:0003676
Mibi03g0291 649 SMART rrm2_1 208 280 IPR003954 GO:0003676
Mibi03g0291 649 SMART rrm2_1 117 189 IPR003954 GO:0003676
Mibi03g0291 649 SMART rrm2_1 311 383 IPR003954 GO:0003676
Mibi03g0291 649 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Mibi03g0291 649 CDD RRM4_I_PABPs 309 387 - -
Mibi03g0291 649 CDD RRM2_I_PABPs 114 190 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0291 Mibi-ChrMibi03 3290418 3294770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0291 1 644 Eukaryotic Initiation Factors Gene Family AT4G34110 72.171 0.0 917