Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0287 ATGCCTGTTAGTTTAGAGCCGTTGGATTTGAGCATCCAGATTCCATACCACTTCAGATGTCCGATCTCGCTGGAGCTCATGCGTGACCCAGTCACAGTCTCCACCGGTCAAACCTACGACCGAGCCAGCATCGAGCCATGGGTAGCCACCGGCAACACCACCTGCCCAGTCACGCGGGCCCCACTCACAGATTTCACCCTAATTCCCAATCATACCCTCCGCCGCTTAATCCAAGACTGGTGCGTCGCCAACCGCGCTTTTGGCATCGAACGTATCCCCACTCCCAAACAACCCGCCGACCCAACGCTAATCCGCTCCTTGCTGACTCAGCTCTCCTCCGAGTCAACACCGAGTCAAACCCGCCTCTCCGTACTGAGTCGACTCAGACAACTCGCTCGTGACTCGGACAAAAACCGCCACGTCATCTCCTCACTCAACAACCTCCGTGAAACCCTCCTCCGCCTCGTCTTCTCCGCCGAGTCAACTCACTCCGAGTTGACTCAGGAATCGCTCGGTCTCCTCGTCATGTTCCCGCTCGGCGAGTCGGAATCGTCGTCGGTCGCGTCGGATCCGGAGAAAGTCGGTTTGCTGTCGCGGCTTCTTTCTCATAATTCGATCGATGTCCGAGTCAACTCGGCGGCGATGATCGAACTCGTCCTCGCCGGAACTCGGTCGCCGGAGGTCAGATCGGAGATCAGCCGGATCGACGGAATTTACGACGGAATTATCGACATTCTCAGGAATCCGATCGCGCATCCGAGGGCGTTGAAGATCGGAATTAAGGCTTTGTTTGGTCTGTGTTTGATGAAGGAGACGAGGGAGAAGGCGGTGGTCGCCGGAGCTCCGGCGGTGTTGATCGACCGATTGGCGGATTTCGAGAAGTGCGACGTCGAGAGGGCGTTGGCGACGGTCGAATTGCTTTGCCGGGTCCCGGCGGGGTGCGCGGCGTTCGCCGGCCACGCGCTGACGGTGCCGTTGCTGGTGAAGATAATCCTGAAGGTGTCGGACCGGGCGACGGAGTACGCGGCGGGGGCGTTGCTGGCGCTGTGCTCGGAGTCGGAGGATTGCCGGCGGGAGGCGGCGGCGGCGGGGGTGCTGACTCAGCTGTTATTGTTGGTTCAGAGTGATTGTACGGAGAGGGCGAAGAAGAAGGCACAATTGTTGTTGAAGCTTCTTAGGGATTCATGGCCTCAACAAGATTCTCTTGGGAATTCGGATGATTTTGCATGCAGTGAAGTTGTTTTGATACCCTTGTGA 1257 0.5792 MPVSLEPLDLSIQIPYHFRCPISLELMRDPVTVSTGQTYDRASIEPWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRAFGIERIPTPKQPADPTLIRSLLTQLSSESTPSQTRLSVLSRLRQLARDSDKNRHVISSLNNLRETLLRLVFSAESTHSELTQESLGLLVMFPLGESESSSVASDPEKVGLLSRLLSHNSIDVRVNSAAMIELVLAGTRSPEVRSEISRIDGIYDGIIDILRNPIAHPRALKIGIKALFGLCLMKETREKAVVAGAPAVLIDRLADFEKCDVERALATVELLCRVPAGCAAFAGHALTVPLLVKIILKVSDRATEYAAGALLALCSESEDCRREAAAAGVLTQLLLLVQSDCTERAKKKAQLLLKLLRDSWPQQDSLGNSDDFACSEVVLIPL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0287 418 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Mibi03g0287 418 PANTHER WDSAM1 PROTEIN 12 399 IPR045185 GO:0061630
Mibi03g0287 418 SUPERFAMILY RING/U-box 11 90 - -
Mibi03g0287 418 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Mibi03g0287 418 SUPERFAMILY ARM repeat 103 392 IPR016024 -
Mibi03g0287 418 CDD RING-Ubox_PUB 18 59 IPR045210 -
Mibi03g0287 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Mibi03g0287 418 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Mibi03g0287 418 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Mibi03g0287 418 Gene3D - 88 407 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0287 Mibi-ChrMibi03 3251028 3252284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0287 1 415 U-box Gene Family AT3G19380 66.033 0.0 531