LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi03g0268	ATGTCCTCCAACAAACAACCTTCGCCCGCCGCCCTCTCCCCCGACCAAGAACTCTCCATCATCGTCGCCGCCCTTACCAACGTTGTCACCCTCGGCTCCACCACCTCCCACCATCTCAACTTGCCCCTCCCCTTTCCAGACAACAATGCCGGCGGACATGCGGGGCCCGCCCCACCGGGCCGGCCAGGTCTCGGCTTCGAGGAGGACAATGCCGGGAATAGGCAGCGGGTGAGGAGGGCTAATAATAATAAGAAGTACAGGGGAGTGAGGCAGCGGCCGTGGGGCAAGTGGGCCGCCGAGATCAGGGACCCAAGGCGGGCCATCCGGGTCTGGCTCGGCACGTTCAAGACGGCCGAGGAGGCGGCCCGGGCCTACGATAGGGCTGCCATGGAGTACCGTGGGCCCAGGGCTAAGCTGAATTTCCCGTTTACTGATGACTCCATGCTGAATTCGCAGGCCGGTGCTCAGCCGCTGAAGCAGGAGGCTCCGGTGATGGTGACGACGACGGCCGAGGCCGGGCCGGGGAATGTCGATAATCCGAATGCTGGAGTGGGAGCGATGGTGTCTGAGGATGGTGATGAGTTCTGGGATAGGATCGAAAAAGCTGACGTGGAAAGGTGGTGGAAGGAATTTGCTGCCGCTGGAGAATCTTCGGATTCTGTTCCAGCAACTACTCAGAGTTGGTGA	687	0.6128	MSSNKQPSPAALSPDQELSIIVAALTNVVTLGSTTSHHLNLPLPFPDNNAGGHAGPAPPGRPGLGFEEDNAGNRQRVRRANNNKKYRGVRQRPWGKWAAEIRDPRRAIRVWLGTFKTAEEAARAYDRAAMEYRGPRAKLNFPFTDDSMLNSQAGAQPLKQEAPVMVTTTAEAGPGNVDNPNAGVGAMVSEDGDEFWDRIEKADVERWWKEFAAAGESSDSVPATTQSW	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi03g0268	228	Pfam	AP2 domain	85	134	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0268	228	SUPERFAMILY	DNA-binding domain	85	143	IPR016177	GO:0003677
	Mibi03g0268	228	ProSiteProfiles	AP2/ERF domain profile.	85	142	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0268	228	CDD	AP2	84	142	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0268	228	Gene3D	AP2/ERF domain	84	143	IPR036955	GO:0003700\|GO:0006355
	Mibi03g0268	228	FunFam	Ethylene-responsive transcription factor 2	84	143	-	-
	Mibi03g0268	228	PANTHER	DNA-BINDING DOMAIN	75	160	IPR044808	GO:0003700\|GO:0009873
	Mibi03g0268	228	PRINTS	Ethylene responsive element binding protein signature	108	124	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0268	228	PRINTS	Ethylene responsive element binding protein signature	86	97	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0268	228	SMART	rav1_2	85	148	IPR001471	GO:0003700\|GO:0006355
	Mibi03g0268	228	MobiDBLite	consensus disorder prediction	44	76	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi03g0268	Mibi-ChrMibi03	3012212	3012898	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi03g0268	16	142	AP2-EREBP Transcription Factor Family	AT5G61890	45.669	1.53e-29	108

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi03g0268		AP2	2.8e-15	CL0081