Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0255 ATGACTGATGATCTTTCTTCCTCCGCCAAGGATGTGTTCCTTGGAAAGGCTTCAAGGAATTCTACATTGCTGGGGAAGATGAGCGTGCTGGTCTTTGCAATGGTCTGTGGAGTGTACGTATGTTCTATCTGTATAAAGCAGATAAGCACTACCCCTAAGATTGGGCTTTTGGATGTAAAGGTAGTCAACGAGACATGCCCAGAACTCAAAATTGAACCTTGGGAAATCCCTTACGTGCATTACCCAAAACCCAAAACTTTCAGCAGGGCTGAATGTGCTTGCAATCCTGTGAGGTATTTTGCCCTGTTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACATTTCTGAATAATCATACTAACATAAGCTCAAATGGGGAAATTTTCTCTGTTAAAGATAGAAGGAGTAATATCTCAACCATTGTGGAAACTCTGGATATAATTTATAATTTAGATTGGCTAAGTAGCGCATCGAAAAATGAATGCACAGCTGCAGTTGGCTTTAAGTGGATGCTTAATCAGGGGCTAATGAAAAATCATGAACAAATAGCAGAGTACTTCATAAAACAAGGTGTTTCAGTTATATTTCTTTTCCGAAGGAATCTCCTCCGCAGGATGATCTCTATACTTGCAAATCAATATGACAGAGATGCTAAGCTTTTAAATGGAACTCACAAGTCTCATGTTCATTCACCCCATGAGGCAGAGACACTTGCAAAATACAAGCCCACGGTCAACCCAACGTCTTTGATATCCGAGCTGAGGCAAGTGAATGAGACCACCACCAAGGCCTTGGAATGTTTCAAGAACACCAGACATATTGTCGTATACTATGAGGATGTTGTCAAAAACCGCACTAAATTAGCAGATGTTCAAGATTTTCTCAGGGTTCCTAATAAAGATCTGAAGAGCCGTCAGGTGAAGATACATAAAGGGCTCATACTCAATCAGATCGAGAACTCAAATGAAGTCAACAAGACACTCCATGGAACAGCATATGAGAACTTCCTTCATTCAGATTACCGTTAGTCCTCAAATTTCATCACCACACACGAACTTTCACAGAGTCGGAGAGAAAACCAAGAAGGTACAGACAGAGAAGAGAAGCTCCACATTGAAGAAGAAGAAGCCATGGCTCAGCCTACAAACGCGGCGGCAGATCTGAATCAGCACCAGCATCAGCCGCAGTGGACGGCGGCGGCGGCGGCGGCGCAGCAACCACATCAGTATCAGCAACAATGGATGTCTATGCAGTATCCTGCAGCCGCCATGGCCATGATGCAACAACAGATGATGATGTATCCTCAACATTACATGCCTTATGTTCACCATTACATGCCTCCTCATCAGCAGCAACAGCAACAACAACAGGTTAAGCCGCAGCAGCAATATCAGAATCAGCAGAAGCAAGTGACGTCAGATGAGATCAGGACTATATGGCTTGGTGACCTTCATCATTGGATGGATGAGAATTATCTTCATAACTGTTTTCTTCATACAGGCGAGGTTGTATCAGCCAAGGTTATACGAAACAAGCAAACTGGCCAGTCAGAGGGTTATGGATTTGTTGAGTTTTATTCACGACCAACAGCTGAGAAAGTTTTGAACAACTACAATGGTACTGTGATGCCAAATACCGATCAGCCCTTTCGTCTTAATTGGGCTAGTTTCAGCGCGGGTGATAGGAGATCTGATGTTACTTCTGATCTGTCTATATTTGTTGGGGACCTGGCTGTAGATGTTACTGATGCTATGCTGCATGAAACCTTTTCTAGCAGATATACATCTGTAAAGGGAGCCAAAGTTGTCATTGATTCAAACACTGGCCGTTCAAAAGGTTACGGTTTCGTAAGGTTTGGTGATGAAAATGAGAGGTCTAGGGCCATGACTGAAATGAACGGATGCTATTGTTCAAATCGTCCTATGCGTATAGGGGTTGCAACCCCAAAGAAGTCCCATGGGTATCAACAACAATATTCTTCCCAAGCTGTAGTATTAGCTAATGGATATTCTTCTAATGGTGCCACCACACAAGGTTCCCAGCCTGAAGGGGACTCGAATAACACTACTATTTTTGTCGGGGGCCTTGATTCTGATGTTAGAGATGATGATCTTAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCGGTCAAAATACCTGTGGGTAAAGGTTGTGGTTTCGTTCAATTTTCTGACAGAAAGAATGCTGAGGAAGCACTTCAAGCATTGAATGGGACAGTAATCGGGAAGCAGACCGTACGTCTTTCATGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACAGATTCCAATGGAGGTCAATATGGAAGTCAGGGATCTGCCATGCGACAAAACCAGGATCTCGGTATGAACTTTGCTGCTGCAGTTCAAGGGGCATCCTGA 2409 0.4363 MTDDLSSSAKDVFLGKASRNSTLLGKMSVLVFAMVCGVYVCSICIKQISTTPKIGLLDVKVVNETCPELKIEPWEIPYVHYPKPKTFSRAECACNPVRYFALLSMQRSGSGWFETFLNNHTNISSNGEIFSVKDRRSNISTIVETLDIIYNLDWLSSASKNECTAAVGFKWMLNQGLMKNHEQIAEYFIKQGVSVIFLFRRNLLRRMISILANQYDRDAKLLNGTHKSHVHSPHEAETLAKYKPTVNPTSLISELRQVNETTTKALECFKNTRHIVVYYEDVVKNRTKLADVQDFLRVPNKDLKSRQVKIHKGLILNQIENSNEVNKTLHGTAYENFLHSDYRXSSNFITTHELSQSRRENQEGTDREEKLHIEEEEAMAQPTNAAADLNQHQHQPQWTAAAAAAQQPHQYQQQWMSMQYPAAAMAMMQQQMMMYPQHYMPYVHHYMPPHQQQQQQQQVKPQQQYQNQQKQVTSDEIRTIWLGDLHHWMDENYLHNCFLHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRPTAEKVLNNYNGTVMPNTDQPFRLNWASFSAGDRRSDVTSDLSIFVGDLAVDVTDAMLHETFSSRYTSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGCYCSNRPMRIGVATPKKSHGYQQQYSSQAVVLANGYSSNGATTQGSQPEGDSNNTTIFVGGLDSDVRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGQYGSQGSAMRQNQDLGMNFAAAVQGAS 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0255 802 MobiDBLite consensus disorder prediction 672 696 - -
Mibi03g0255 802 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 478 558 IPR000504 GO:0003723
Mibi03g0255 802 FunFam Polyadenylate-binding protein RBP47B 477 557 - -
Mibi03g0255 802 SUPERFAMILY RNA-binding domain, RBD 572 764 IPR035979 GO:0003676
Mibi03g0255 802 MobiDBLite consensus disorder prediction 446 470 - -
Mibi03g0255 802 Gene3D - 440 562 IPR012677 -
Mibi03g0255 802 Gene3D - 563 664 IPR012677 -
Mibi03g0255 802 SMART rrm1_1 572 646 IPR000504 GO:0003723
Mibi03g0255 802 SMART rrm1_1 479 554 IPR000504 GO:0003723
Mibi03g0255 802 SMART rrm1_1 691 758 IPR000504 GO:0003723
Mibi03g0255 802 CDD RRM2_SECp43_like 570 649 - -
Mibi03g0255 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 305 IPR027417 -
Mibi03g0255 802 MobiDBLite consensus disorder prediction 349 389 - -
Mibi03g0255 802 MobiDBLite consensus disorder prediction 672 695 - -
Mibi03g0255 802 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 571 650 IPR000504 GO:0003723
Mibi03g0255 802 MobiDBLite consensus disorder prediction 448 470 - -
Mibi03g0255 802 FunFam Polyadenylate-binding protein RBP47B 559 661 - -
Mibi03g0255 802 Gene3D - 671 793 IPR012677 -
Mibi03g0255 802 SUPERFAMILY RNA-binding domain, RBD 444 559 IPR035979 GO:0003676
Mibi03g0255 802 CDD RRM1_SECp43_like 479 559 - -
Mibi03g0255 802 MobiDBLite consensus disorder prediction 356 377 - -
Mibi03g0255 802 CDD RRM3_NGR1_NAM8_like 689 760 - -
Mibi03g0255 802 Gene3D - 97 321 IPR027417 -
Mibi03g0255 802 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 692 755 IPR000504 GO:0003723
Mibi03g0255 802 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 573 642 IPR000504 GO:0003723
Mibi03g0255 802 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 480 547 IPR000504 GO:0003723
Mibi03g0255 802 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 690 762 IPR000504 GO:0003723
Mibi03g0255 802 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 12 342 - -
Mibi03g0255 802 FunFam Polyadenylate-binding protein RBP47 672 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0255 Mibi-ChrMibi03 2816499 2827136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0255 477 759 Eukaryotic Initiation Factors Gene Family AT2G23350 29.412 1.32e-25 110