LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi03g0242	ATGGATCGGCCGGCGATCACAGTTGGGCCAGGGATGGATTTGCCTATTATGCATGATAGTGACCGATATGAGCTTGTGCGTGATATTGGGTCTGGAAATTTTGGGGTAGCAAGGCTTATGAGGGACAAGCAAACAGACGAGCTTGTTGCTGTGAAGTACATAGAGAGGGGTGATAAGATAGATGAAAATGTTCAAAGGGAAATCATAAATCACAGATCACTTAGGCACCCCAACATTGTCAGGTTCAAGGAGGTCATATTGACACCAACACATCTGGCTATTGTGATGGAATATGCTTCAGGAGGAGAGCTATTCGAACGAATATGCAATGCCGGGCGGTTCAGTGAGGATGAGGCTCGTTTCTTTTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGCAAGTATGCCATCGGGACTTGAAGTTGGAGAACACTCTATTGGATGGTAGCCCAGCTCCTCGTTTGAAAATATGTGATTTTGGGTACTCCAAGTCCTCTGTGCTACATTCACAACCAAAATCTACAGTTGGTACTCCAGCTTATATCGCTCCAGAAGTTTTGCTTAAGAAAGAGTATGATGGCAAGATTGCAGATGTATGGTCTTGTGGGGTGACTTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGACCCAGAGGAACCAAAAAATTTCCGCAAGACAATACATAGGATTTTGAATGTTCAATATTCAATTCCCGACTATGTTCACATATCTCCTGAATGCCAACATCTCATCTCAAGAATCTTTGTTGCTGACCCTGCAAAGAGAATAACCATCCCTGAGATCAGAAACCATGAATGGTTCCTAAAGAACCTTCCAGCTGATCTTATGGATGATCACAGTACAGCAAACAGCCAGTTTGAGGAGCCTGATCAACCAATGCAGAGCTTAGAGGAAATCATGCAAATAATTGCAGAAGCTACAATTCCTGCAGCTGGGACTCAATCTCTCAACAACTATCTTAACGGAAGCTTAGATATTGATGATGACATGGAGGAGGACCTAGAGTCTGACCCTGAACTCGACATCGATAGCAGTGGAGAAATAGTTTATGCAATGTTACCCTGA	1101	0.4332	MDRPAITVGPGMDLPIMHDSDRYELVRDIGSGNFGVARLMRDKQTDELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECQHLISRIFVADPAKRITIPEIRNHEWFLKNLPADLMDDHSTANSQFEEPDQPMQSLEEIMQIIAEATIPAAGTQSLNNYLNGSLDIDDDMEEDLESDPELDIDSSGEIVYAMLP	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi03g0242	366	SUPERFAMILY	Protein kinase-like (PK-like)	15	314	IPR011009	-
	Mibi03g0242	366	ProSitePatterns	Protein kinases ATP-binding region signature.	29	52	IPR017441	GO:0005524
	Mibi03g0242	366	ProSiteProfiles	Protein kinase domain profile.	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g0242	366	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	138	150	IPR008271	GO:0004672\|GO:0006468
	Mibi03g0242	366	PANTHER	SERINE/THREONINE KINASE	22	310	-	-
	Mibi03g0242	366	Gene3D	Transferase(Phosphotransferase) domain 1	99	287	-	-
	Mibi03g0242	366	SMART	serkin_6	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g0242	366	FunFam	Serine/threonine-protein kinase SRK2E	15	98	-	-
	Mibi03g0242	366	Gene3D	Phosphorylase Kinase; domain 1	1	98	-	-
	Mibi03g0242	366	FunFam	Serine/threonine-protein kinase SRK2E	99	287	-	-
	Mibi03g0242	366	Pfam	Protein kinase domain	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g0242	366	CDD	STKc_SnRK2-3	22	278	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi03g0242	Mibi-ChrMibi03	2654932	2658996	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi03g0242	16	304	CBL-interacting serine-threonine protein kinases	AT4G24400	42.475	1.68e-70	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Mibi03g0242		Pkinase	2.5e-72	CL0016