Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0166 ATGTTGGTCACTAGTTGTTGGGCTTTCTTATGTTGTGTTTTCAGCTGCATTTTCTTGCTTGGTGGGGGTGTGGGGGTAGGTCTAGAAGCACCAAAGGTATACAAACATCATTCCCGGAAAGTTGATCTCATTGATGAGCTTTATGAAGTTGAAAGATTTAATTCAGAGAAACACAAAAGATTAAATGTTGTGGACTATAGCAATCCACATGCAATTGCGAACTTGCTTGATGGCCTGAACCACGGAAAATTTGGAAGTGTCACCAAGGATATAGAGTCCCTTATAGCTCAAAAGATGCAGGTATTGAGCCCTATATTTGCAAAAGATCCCGCACTTCTACAGTTTGTGAAAGTGGAAATCAATCACAATGAAGAAGCCGCTAAGCAGTACCATGGTCCCAGTGCACATCGGCCTCCTTCTGGGGGTCATGCTGGAAGTCTAGATGTAAAATCTAAACCTTTTGTTGTTGACAAAGACAATATTGGTAAAGATGAAGGTGATATTGAAAAAGATAAAGCTGAAAAGGGTGGGGGTGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTTTGTGGGGTTATTGACAGAGGAATCGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAGAGTACAAGAACTTACATGGCTGATTCATGGAATTCCAAAGATAGAGCTGCGCCTGAGGTATCAGGACTTAAATTTGGTGAAGATGGTCTGGTGATATCCGAAATCTCTGCTCACCCTAGGCATATGAAGCAAATGAAGCCTCATCAAATTGAGGGATTTAATTTTCTTGTCCGGAACCTTGCGGGTGACCATCCCGGTGGCTGCATCTTGGCTCATGCTCCTGGTTCTGGGAAGACATTCATGATAATTAGTTTCATGCAAAGCTTTCTTGGCAAGTATCCCAATGCTCGGCCTCTTGTGGTTCTTCCCAAGGGAATACTGGCGATTTGGAAAAAAGAGTTTCAGATATGGCAAGTGGAGGACATTCCACTCTTTGATTTTTATTCTGCTAAAGCAGACAGTCGATCTCAGCAACTTGAAGTTTTAAAACAGTGGGTGGAGCAGAAGAGCATTCTTTTCTTAGGATACAAACAATTCTCATCAATTGTCTGTGATGATGGAACTAGTCATGTATCAACATCTTGCCAAGAGATATTGTTGAAGGCTCCTTCTATTCTGATTTTGGATGAGGGACACACACCAAGGAATGACAACACTGACATAGTTCAGTCTCTTGCCAAAGTTCTAACTCCTCGTAAAGTTGTACTGTCGGGAACCCTTTATCAAAATCATGTCAAAGAGGTGTTTAATATTTTAAACATTGTGCGTCCAAATTTTCTACGTTCACAGACATCTCGGCCTATTGTCAGGCGCATTAAGAGTAGAGTTCATGTACCAGGCGTTAGGGATTTCTGTGACTTGGTAGAGAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAAGCCAGGTGCTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCCGGCCTTGTGGATTTTGCAGTTGTATTGAATCTTACTCCCCGACAGAAGAATGAAGTCAATAAACTAAGGCGCTTATCCAGAAAGTTTAAGATAAGTTCTGTAGGAAGTGCTGTTTATCTTCACCCTAACTTAAAGCCTATGGCAGAAAATTGTGCTGAGAACTCTGTATCTGATCACATGATGGATGAGAAAATAGAGGGTCTAGATTTGGAAGATGGGGTGAAGTCAAAGTTCTTTCTTAAAATCCTGAGCCTGTGTGAATCAAGTGGGGAGAAGCTTCTAGTTTTCAGCCAATATCTCTTGCCTTTGAAGTATTTGGAAAGATTGACCATGAAAAGGAAGGGATGGAGCACTGGGAAAGAGATATTTGTTATATCAGGTGAATCAAGCTCTGAACAGAGAGAATGGTCCATGGAGCAGTTTAACAATTCACCGAATGCCAAAATCTTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTCTGGTTGGAGCATCACGCATAATTATCCTGGATGTTCATCTGAATCCATCAGTTACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATACCGGTTGATAGCTGCTGATTCTCCCGAACAGGATGACCATGATACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTTTCCGTGATTTTGAAGTTGAGACGGTTGATGTGGAAGAATGTGGTGATCTCTTTCTGCAAAGTCCATTGATAAGGGATGATATAAAAGTTCTGCACAGAAGGCCTGGGCATTCGGGTGATTGA 2397 0.413 MLVTSCWAFLCCVFSCIFLLGGGVGVGLEAPKVYKHHSRKVDLIDELYEVERFNSEKHKRLNVVDYSNPHAIANLLDGLNHGKFGSVTKDIESLIAQKMQVLSPIFAKDPALLQFVKVEINHNEEAAKQYHGPSAHRPPSGGHAGSLDVKSKPFVVDKDNIGKDEGDIEKDKAEKGGGDCDHSYVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYMADSWNSKDRAAPEVSGLKFGEDGLVISEISAHPRHMKQMKPHQIEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILAIWKKEFQIWQVEDIPLFDFYSAKADSRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDDGTSHVSTSCQEILLKAPSILILDEGHTPRNDNTDIVQSLAKVLTPRKVVLSGTLYQNHVKEVFNILNIVRPNFLRSQTSRPIVRRIKSRVHVPGVRDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLTPRQKNEVNKLRRLSRKFKISSVGSAVYLHPNLKPMAENCAENSVSDHMMDEKIEGLDLEDGVKSKFFLKILSLCESSGEKLLVFSQYLLPLKYLERLTMKRKGWSTGKEIFVISGESSSEQREWSMEQFNNSPNAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLIAADSPEQDDHDTCFKKELISKMWFEWNEYCGFRDFEVETVDVEECGDLFLQSPLIRDDIKVLHRRPGHSGD 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0166 798 CDD SF2_C_SNF 599 727 - -
Mibi03g0166 798 SMART helicmild6 628 716 IPR001650 -
Mibi03g0166 798 Pfam Helicase conserved C-terminal domain 604 715 IPR001650 -
Mibi03g0166 798 Pfam SNF2-related domain 281 507 IPR000330 GO:0005524|GO:0140658
Mibi03g0166 798 Gene3D - 237 474 IPR038718 -
Mibi03g0166 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 754 IPR027417 -
Mibi03g0166 798 SMART ultradead3 257 467 IPR014001 -
Mibi03g0166 798 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 454 IPR014001 -
Mibi03g0166 798 Gene3D - 524 776 IPR027417 -
Mibi03g0166 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 461 IPR027417 -
Mibi03g0166 798 MobiDBLite consensus disorder prediction 129 149 - -
Mibi03g0166 798 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 602 770 IPR001650 -
Mibi03g0166 798 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 168 789 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0166 Mibi-ChrMibi03 1760801 1766056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0166 613 734 RAD5 or RAD16-like Gene Family AT5G43530 36.885 5.95e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi03g0166 SNF2_N 1.1e-18 CL0023