Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi03g0146 | ATGCTTATAATCCGAATTGTTTCAGTGCTAGTTAAAGCAAGCAGTGGACCTAGATATGTGGTTGGCTGCCGCCATAAGGTTGACAAGGAGAAGTTAACTGCAGGCACTCGAGTGGTGCTTGATATGACTACTCTAACTATCATGAGGCCTTTACCCCGCGAAGTCGACCCAGTTGTATATAATATGCTTCATGAAGACCCTGGCAATGTTAGTTACTCTGCTGTTGGAGGGCTTTCAGATCAGATTCGAGAGCTGAGGGAATCAATAGAACTGCCTTTGATGAATCCTGAGCTGTTTCTAAGGGTTGGCATCAAACCACCCAAGGGTGTTCTTCTTTATGGACCTCCTGGAACTGGCAAGACATTATTAGCTAGAGCAATAGCAAGTAATATAGATGCTAACTTTTTGAAGATTGTATCCAGTGCTATCATTGATAAGTATATTGGCGAAAGTGCAAGGTTGATTAGGGAAATGTTTGGATATGCACGTGATCATCAGCCTTGCATCATATTTATGGATGAGATTGATGCCATTGGTGGACGCCGTTTCAGTGAGGGAACAAGTGCTGACCGGAAATTCAAAGAACCCTCATGGAGTTGCTTAACCAGCTTGATGGGTTTGATCAGCTTGGAAAGACCCGATGTGCTTGACCCAGCCCTTCTTCGACCTGGCCGACTTGATCGTAAAATTGAGATTCCATTGCCAAATGAGCTATCAAGGATGGAAATCCTCAAAATTCATGCTGCTGGAATTGCAAAACATGGGGAAATTGACTATGAAGCAGTTGTTAAACTTGCTGAGGGTTTCAATGGTGCGGATCTTCGGAATGTCTGCACTGAAGCTGGGATGTCTGCTATACGTGCAGAACGTGACTATGTAATTCATGAAGATTTCATGAAGGCTGTGCGGAAATTAAATGAAGCTAAGAAACTAGAATCTAGTGCCCATTATAATGCTGATTTCGGGAAGGATTGA | 975 | 0.4328 | MLIIRIVSVLVKASSGPRYVVGCRHKVDKEKLTAGTRVVLDMTTLTIMRPLPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADRKFKEPSWSCLTSLMGLISLERPDVLDPALLRPGRLDRKIEIPLPNELSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi03g0146 | 324 | Pfam | AAA+ lid domain | 257 | 299 | IPR041569 | - | |
| Mibi03g0146 | 324 | PANTHER | 26S PROTEASOME REGULATORY SUBUNIT | 8 | 312 | - | - | |
| Mibi03g0146 | 324 | SMART | AAA_5 | 106 | 236 | IPR003593 | - | |
| Mibi03g0146 | 324 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 70 | 309 | IPR027417 | - | |
| Mibi03g0146 | 324 | TIGRFAM | 26Sp45: 26S proteasome subunit P45 family | 8 | 305 | IPR005937 | GO:0005737|GO:0030163|GO:0036402 | |
| Mibi03g0146 | 324 | CDD | AAA | 76 | 234 | - | - | |
| Mibi03g0146 | 324 | FunFam | ATPase family, AAA domain-containing 2B | 68 | 234 | - | - | |
| Mibi03g0146 | 324 | Pfam | ATPase family associated with various cellular activities (AAA) | 110 | 234 | IPR003959 | GO:0005524|GO:0016887 | |
| Mibi03g0146 | 324 | Gene3D | - | 3 | 62 | IPR012340 | - | |
| Mibi03g0146 | 324 | Pfam | Proteasomal ATPase OB C-terminal domain | 9 | 52 | IPR032501 | - | |
| Mibi03g0146 | 324 | Gene3D | - | 238 | 318 | - | - | |
| Mibi03g0146 | 324 | FunFam | 26S protease regulatory subunit 10B | 235 | 306 | - | - | |
| Mibi03g0146 | 324 | Gene3D | - | 63 | 234 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi03g0146 | Mibi-ChrMibi03 | 1543220 | 1544868 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi03g0146 | 73 | 291 | Calmodulin-binding Proteins | AT3G56690 | 37.229 | 8.07e-36 | 135 |