Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0143 ATGACAAAGACTACACCCAAAGCATCATCAACTGTTGTAATTATCGATTCAGATGAGGAAGATGACAGAGATCAGAAACCTTGGCTGCCATTTCAAGAAGTTATACTGCCAAAACCTGTTGTCCTGTCTACTTCAAAGGACATAGCTGAATACCATGGCCCCAATGCACATTGCCCTCCTACTGGGGGTCATGCTGGAAGTCTAAATGTAAAACCTAAACTTTTTCTCGTTGGCAAAGACAACATTGGAAAAGATAAAGGTGACTTTGAAAAAGATAAAGGTGCTTTTATCGGTTTTCAAGAGGAAGACACTCTACAGGCAGATGCCAAGGATGATGGGCTAGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTGCTATGGATTCTCTACATGATGAAGCTGAAAAGGGTGGGGGTGACTGTGATCATTCTTATGTTTTAAAGGATGATCTTGGTTATGTCTGTCGTGTTTGTGGGGTTATTGACAGAGGAATCGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAGAGTACAAGAACTTACATGGCTGATTCTTGGAATGCCAAAGAGAGAGCAGCACCTGAGATATCTGGACTTAAATTTGATGAAGATGGTCTAGTGATAACCGAAATATCTGCTCACCCTAGGCATATGAAGCAAATGAAGCCTCATCAAATTGAAGGATTTAATTTTCTTGTCCGGAACCTTGCGGGCGACAATCCTGGTGGCTGCATCTTGGCCCATGCTCCTGGTTCTGGGAAGACTTTCATGATTATCAGCTTCATGCAAAGTTTTCTTGGCAAGTATCCTAATGCTCGACCCCTTGTGGTTCTTCCCAAGGGAATATTGGCAATTTGGAAGAAGGAGTTTCAGATATGGCAAGTGGAGGACATTCCACTCCTTGATTTTTACTCTGCTAAGGCAGATAGTCGATCACAGCAGCTTGAAGTTTTAAAACAGTGGGTAGAGCAGAAGAGTATTCTTTTCCTAGGATACAAACAATTCTCATCAATTGTCTGTGATGCTGGAACAAGCCATGTCTCGACATCTTGCCAAGAGATATTACTGAAGGCTCCTTCTATTTTGATTTTGGATGAGGGACATACACCAAGGAATGACAATACTGACATAGTGCAATCTCTTGCGAAAGTGCAAACTTCTCGAAAGGTTGTACTGTCAGGGACCCTGTATCAAAATCATGTCAAAGAGGTGTTCAACATTTTAAACATCGTGCGGCCAAATTTTCTACGTTCACAGACATCTCGGCCTATAGTCAGGCGCATCAAGAGTAGAGTTCATGTGCCAGGTGTGAAGGATTTCTGTGACCTGGTAGAGAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAGGCCAGGTACTTCATTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTGGATTTTGCTGTTGTTCTGAATCTTAGTCCTCGACAGAGGAATGAAGTCAATAAACTAAAGCACTTATCAAGAAAGTTTAAGATAAGTTCTGTAGGAAGTGCTGTTTATCTTCACCCTAATTTAAAGCCCATGGCAGAAAATTGTGCTGAGAATTCTGTATCTGATCACATGATGGATGAAAAAATAGAGGGTCTTGATTTGGAAGATGGGGTGAAGTCAAAATTTTTTCTTAAGATCTTAAGCCTGTGTGAATCAAGTGGGGAGAAACTTCTAGTTTTCAGCCAATACCTCTTGCCTTTGAAGTATTTGGAAAGGTTGACTGTGAAAAGGAAGGGATGGAGTACTGGGAAAGAGATATTTGTTATATCAGGTGAATCAAGCTCTGAACAAAGAGAATGGTCCATGGAGCAGTTTAACAATTCACCAAATGCTAAAATCTTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTCTGGTTGGGGCATCACGCATAATTATCCTGGATGTTCATCTGAATCCATCAGTGACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATATCGGTTGATAGCTGCTGATTCTCCTGAACAGGATGACCATGATACTTGTTTCAAGAAGGAGCTAATATCAAAAATGTGGTTTGAATGGAACGAGTATTGCGGTTTTCGTGAATTTGAAGTTGAGACAGTTGATGTGGAAGAATGTGGTGATCTCTTTCTGCAAAGTCCATTGATAAGGGATGATATAAAAGTTCTGCACAGAAGGCTTGAAGCAAAGGTTTTGGTCTGCCTTAATAGCGGAAGATCCTTCAAAACAACTTGTGAGAAAGTTCCGATAGAGAAAGTGAGGCTCTATTGTGTAAGTCTGATAAGACAACCTCTTCCAGGGCATGGTGATCGATATTTTTGTTCAACATTCTTCGATTTGGTGAAGATGCTGATAACAGAATCTTCTAGAGGTAACCAGCAATTGATGTTTCTCCGATCATATGTCCTAGTTTTGTTCATCAATCCTATTGTTGCACTTTTCTTTTCTTTTTTCTTTTTTCCAAAACGAGATGAAGATATGCGCCTTGTCGTTGAAGGAGCAAATCTTACAATAAATTTCAAGATAGAGATACAACAGTGCTTGCCTTGTCCTTGA 2655 0.4068 MTKTTPKASSTVVIIDSDEEDDRDQKPWLPFQEVILPKPVVLSTSKDIAEYHGPNAHCPPTGGHAGSLNVKPKLFLVGKDNIGKDKGDFEKDKGAFIGFQEEDTLQADAKDDGLEDIWREMSMAIECSKDVAMDSLHDEAEKGGGDCDHSYVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYMADSWNAKERAAPEISGLKFDEDGLVITEISAHPRHMKQMKPHQIEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILAIWKKEFQIWQVEDIPLLDFYSAKADSRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDAGTSHVSTSCQEILLKAPSILILDEGHTPRNDNTDIVQSLAKVQTSRKVVLSGTLYQNHVKEVFNILNIVRPNFLRSQTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTGQVLHYYKGDFLDELPGLVDFAVVLNLSPRQRNEVNKLKHLSRKFKISSVGSAVYLHPNLKPMAENCAENSVSDHMMDEKIEGLDLEDGVKSKFFLKILSLCESSGEKLLVFSQYLLPLKYLERLTVKRKGWSTGKEIFVISGESSSEQREWSMEQFNNSPNAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLIAADSPEQDDHDTCFKKELISKMWFEWNEYCGFREFEVETVDVEECGDLFLQSPLIRDDIKVLHRRLEAKVLVCLNSGRSFKTTCEKVPIEKVRLYCVSLIRQPLPGHGDRYFCSTFFDLVKMLITESSRGNQQLMFLRSYVLVLFINPIVALFFSFFFFPKRDEDMRLVVEGANLTINFKIEIQQCLPCP 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0143 884 Gene3D - 197 441 IPR038718 -
Mibi03g0143 884 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 101 757 IPR044567 GO:0080188
Mibi03g0143 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 428 IPR027417 -
Mibi03g0143 884 SMART ultradead3 224 434 IPR014001 -
Mibi03g0143 884 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 569 737 IPR001650 -
Mibi03g0143 884 MobiDBLite consensus disorder prediction 1 25 - -
Mibi03g0143 884 Gene3D - 491 745 IPR027417 -
Mibi03g0143 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 721 IPR027417 -
Mibi03g0143 884 CDD SF2_C_SNF 566 694 - -
Mibi03g0143 884 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 242 421 IPR014001 -
Mibi03g0143 884 SMART helicmild6 595 683 IPR001650 -
Mibi03g0143 884 Pfam SNF2-related domain 248 509 IPR000330 GO:0005524|GO:0140658
Mibi03g0143 884 Pfam Helicase conserved C-terminal domain 571 682 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0143 Mibi-ChrMibi03 1482477 1488173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0143 580 701 RAD5 or RAD16-like Gene Family AT5G43530 36.885 1.11e-14 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi03g0143 SNF2_N 2.3e-20 CL0023