Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0141 ATGGGGAAGAAGAAAGTGAAGGAAAGTGGAGGGAAAGAGCACTGTCCCTCTACTGTTTTCATCTCTAACTTGCCTTACTCATTCACCAATTCTCAGCTTGAGGAGACGTTTAGCGAAGCTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCATCTCAGCATCGTGGTTTTGGTTATGTTCAGTTTGCTGTTGAGGAAGATGCGAACCGGGCAATTGAGTTGAAGAATGGTTCATCTGTTGGAGGACGGAAAGTAGCAGTAAAGCATGCTATGCCTCGTCCTCCCCGTGAAGCGCGACAATCAAAGTCAAACCAAGGTTATTGCTACACTAAATCTGGTTCAGCATACTGCAATACATATAGGCACTCTTATAATTCTCAGCTGGAAGCACATCATAAATGCATGAATGTTGTCAAAATCCCCATCCCCCCCACCCCATGCACTTGTCTTCTTTTCTATTCTGACTTTTGTCATGCTACAGCGGAGAATGCTGATGACGTCCTAAAGTCAAAAAATGATGACCATGATAGTGGCTTTTCTGGAGTGAAGAAGCCTTCTCCAGTTATTAAGGAAAAAGTTGTAAATAATGAAAACCATTCAAGGAAGCCTAGTGAAGTGAAAAAAGCAGTTCTTTGTAGTGATATAGCAGATGAGGGGGGTTGTTCTGAAAAGCAGAGGGTTGCTAGAACTGTCATATTTGGCGGTCTTATCAATTCGGATATGGCTGAAGTCGTTCACAGCCGAGCAAGGGAGATTGGCAGTGTGTGTTCTATAAAGTACCCCCTTCCCAGGGAAGAATTTGAACGGCATGGTCTCTTGCAAGAGGGCTGTAAATTGGATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGTGTTGTTGCATCAGAAAGAAATTGGAGGAGGAACTGTTTGGGCACGTCAATTGGGTGGAGAGGGCTCCAAGACACAAAAATGGAAACTTATTATAAGAAATCTTCCATTCAAGGCGAAGGAAAATGAAGTAAAAGAAATGTTTTTATCTGCTGGGTTTGTGTGGGATGTATTTATTCCACGAAAGTCTGATACAGGACTGTCCAAGGGTTTTGCATTTGTCAAATTCACTTGCAAGCTAGATGCAGAAAATGCTATTCAGAAACTTAATGGATCAAAGTTTGGCAAACGGCACATAGCTGTTGATTGGGCCGTTCCAAAGAAGATATATAGCAGTGATAAAAATGCTAAGCTTGCCTTAGAAAATGGTAAAAATTCAGATAATTTAGATGAAGATGGTGGTAGTTCTGAGGACAGTTCAGAGGATGATGTTGAGGATATGGGTAAACAGGCCCATCAAGAAGATGATTCCAGCTCTTCACAGGAAGAAGAGGTACCATCTGAAGTTAACTTTGATGAGGAAGCTGAGATTGCCAAAAGGGTTCTCAATAACTTCATCACATCCTCCACCAAAGAAACATCCACAAATGATGATTCTATGTTGTCCAAGAAAAGGAAGGAATCAAAGTCCAATAAAAATGTGAATGATGCAGAGAAAAAATCATCTAAGGAGTTAGAAAAGGTTAAAGATGTTTCTGAGCCTGAAATCTTGGACAGAAGCAAGACATCTAATCTTAATCAAACAGAAGAAGATTTGCAGAGAACAGTTTTCATAAGTAATCTTCCCTTTGACTGTGATAATGAAGAAGTGAAACAACGATTCTCTGGATTTGGGGAAGTGGAATACTTTGCTCCAGTCCGCCACCAGGTGACCAAACGGCCAAGAGGAACTGGTTTTCTCAAGTTTAAAACTGCTGATGCTGCTGATGCTGCGGTTTCAACTGCTGGTGCTGCTTCTGGCTTGGGCATTCTTCTCAAAGGTCGGCCATTAAAAGTTTTGAAGGCTTTAGATAAGAAGTCGGCTCATGACATGGAACTAAAGAAGGCCAAAAATGACAATCATGACCACCGCAATCTTTACCTGGCTAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTCAAAACGCCAGGAGTTGGAAAGGAAAAAGGCAACTAAGTTACAATCGCCAAATTTTCATGTTTCAAGAACTAGACTTGTTATTTACAACTTACCGAAGTCAATGACTGAAAAAGATCTCAAGAAGCTTTGCATTGATGCAGTTACCTCTAGAGCCACCAAGCAAAAGCCTCAAATTCGACAGATAAAGTTTTTGAAGGATGTGAAGAAAGGAAAGGTTGTTACAAAACATCATTCACGGGGAGTTGCCTTTGTTGAATTTTCAGAGCACCAACATGCCCTTGTGGCTCTAAGAGTTCTTAATAATAATCCAGAAACTTTCGGTCCTGAACACCGGCCAATTGTGGAGTTTGCTGTTGATAATGTTCAAACACTTAAACTTCGGAAAACAAAGATACAGTCTCAGCAGCAGGGTGCTGCTCATGGTGAGAGCAACATTGAGGAAAGTGATGAACCGCGTGTTCCAGGTTTCCATACCAATGGGAAGGATAGAAAACGAAAATTACAGGACCATGGCAAACCAGTGAAGGATTTAGCGCTCAATAAAGATGAATCAGCAAGTACATTGCCAAATCAAAATGCCAAAAGGCAGAAAGGCAATCGTAAAAGTAAAAAGGCTGAGGGATCATCGCCCCATAAAGAAAATTCAGAAGCCTCGTCTATGAAGCCAAATAATGACCAAGATGACCAGAATCATGGTGGCAAGACGTCAAAAACTGTTGTTGACTCCCACAAAACAATCAATGGTAAGAAAATAGATCATGGATTGAAGAAGAGTAGGATGCAGGATCAAGCAGAAGCTGGGGAAAATGTACCGAGGAAACGATTGAAAAAGAATAAAGAGCCTGTAGGGAAAGACATGGTAGATAAGCTTGACATGCTTATACAGCAATATAGATCGAAGTTCTCACAAGGTTCTCAAGGAAATGATGGAGAGAAAAAACCTTCCAAACAGCTAAGAAAATGGTTTGAACCATAA 3021 0.4148 MGKKKVKESGGKEHCPSTVFISNLPYSFTNSQLEETFSEAGPIRRCFMVMQKGSSQHRGFGYVQFAVEEDANRAIELKNGSSVGGRKVAVKHAMPRPPREARQSKSNQGYCYTKSGSAYCNTYRHSYNSQLEAHHKCMNVVKIPIPPTPCTCLLFYSDFCHATAENADDVLKSKNDDHDSGFSGVKKPSPVIKEKVVNNENHSRKPSEVKKAVLCSDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSRAREIGSVCSIKYPLPREEFERHGLLQEGCKLDASAVLYTSVKSARASVVLLHQKEIGGGTVWARQLGGEGSKTQKWKLIIRNLPFKAKENEVKEMFLSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKLDAENAIQKLNGSKFGKRHIAVDWAVPKKIYSSDKNAKLALENGKNSDNLDEDGGSSEDSSEDDVEDMGKQAHQEDDSSSSQEEEVPSEVNFDEEAEIAKRVLNNFITSSTKETSTNDDSMLSKKRKESKSNKNVNDAEKKSSKELEKVKDVSEPEILDRSKTSNLNQTEEDLQRTVFISNLPFDCDNEEVKQRFSGFGEVEYFAPVRHQVTKRPRGTGFLKFKTADAADAAVSTAGAASGLGILLKGRPLKVLKALDKKSAHDMELKKAKNDNHDHRNLYLAKEGLILEGTPAAEGVSASDMSKRQELERKKATKLQSPNFHVSRTRLVIYNLPKSMTEKDLKKLCIDAVTSRATKQKPQIRQIKFLKDVKKGKVVTKHHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVQTLKLRKTKIQSQQQGAAHGESNIEESDEPRVPGFHTNGKDRKRKLQDHGKPVKDLALNKDESASTLPNQNAKRQKGNRKSKKAEGSSPHKENSEASSMKPNNDQDDQNHGGKTSKTVVDSHKTINGKKIDHGLKKSRMQDQAEAGENVPRKRLKKNKEPVGKDMVDKLDMLIQQYRSKFSQGSQGNDGEKKPSKQLRKWFEP 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0141 1006 MobiDBLite consensus disorder prediction 489 546 - -
Mibi03g0141 1006 MobiDBLite consensus disorder prediction 825 861 - -
Mibi03g0141 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 405 IPR000504 GO:0003723
Mibi03g0141 1006 SUPERFAMILY RNA-binding domain, RBD 696 804 IPR035979 GO:0003676
Mibi03g0141 1006 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 398 IPR000504 GO:0003723
Mibi03g0141 1006 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 555 612 IPR000504 GO:0003723
Mibi03g0141 1006 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Mibi03g0141 1006 Gene3D - 482 649 IPR012677 -
Mibi03g0141 1006 CDD RRM4_RBM28_like 705 802 - -
Mibi03g0141 1006 MobiDBLite consensus disorder prediction 496 536 - -
Mibi03g0141 1006 Gene3D - 2 132 IPR012677 -
Mibi03g0141 1006 Gene3D - 314 447 IPR012677 -
Mibi03g0141 1006 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 1005 - -
Mibi03g0141 1006 MobiDBLite consensus disorder prediction 978 993 - -
Mibi03g0141 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Mibi03g0141 1006 FunFam RNA-binding motif protein 28 704 799 - -
Mibi03g0141 1006 MobiDBLite consensus disorder prediction 811 1006 - -
Mibi03g0141 1006 SUPERFAMILY RNA-binding domain, RBD 553 724 IPR035979 GO:0003676
Mibi03g0141 1006 CDD RRM2_RBM28_like 328 404 - -
Mibi03g0141 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 553 636 IPR000504 GO:0003723
Mibi03g0141 1006 CDD RRM3_RBM28_like 553 634 - -
Mibi03g0141 1006 MobiDBLite consensus disorder prediction 444 458 - -
Mibi03g0141 1006 SMART rrm1_1 706 797 IPR000504 GO:0003723
Mibi03g0141 1006 SMART rrm1_1 328 401 IPR000504 GO:0003723
Mibi03g0141 1006 SMART rrm1_1 18 91 IPR000504 GO:0003723
Mibi03g0141 1006 SMART rrm1_1 554 632 IPR000504 GO:0003723
Mibi03g0141 1006 CDD RRM1_RBM28_like 18 96 - -
Mibi03g0141 1006 Gene3D - 704 799 IPR012677 -
Mibi03g0141 1006 SUPERFAMILY RNA-binding domain, RBD 17 313 IPR035979 GO:0003676
Mibi03g0141 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 705 795 IPR000504 GO:0003723
Mibi03g0141 1006 MobiDBLite consensus disorder prediction 420 471 - -
Mibi03g0141 1006 SUPERFAMILY RNA-binding domain, RBD 322 411 IPR035979 GO:0003676
Mibi03g0141 1006 MobiDBLite consensus disorder prediction 894 908 - -
Mibi03g0141 1006 MobiDBLite consensus disorder prediction 909 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0141 Mibi-ChrMibi03 1442614 1454265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0141 17 97 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 2.30e-07 52.0