Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0140 ATGGCTAAACCAAAGGCTCCCAGACGAACCCTAGAGTCATACACAGTCAAACACATAAACAAAACAGTTAAACCCGGCGACTGTGTTCTTATGCGGCCCTCGGAGCCGTCGAAACCATCGTACGTGGCTAGGATCGAGCGGATCGAGGCTGACTCTCGAGGTGCTAACGTTAAGGTTCACGTTCGTTGGTATTATCGGCCGGAGGAGTCAATTGGTGGTCGTCGCCAGTTCCACGGTTCCAAAGAGGTTTTCCTTTCTGATCACTTTGATGTTCAGAGCGCCGATACGATCGAAGGCAAGTGTACGGTTCACAGTTTTAAGGGGTATACGAAGCTCGATGCTGTTGGAAATGACGATTTCTTCTGCCGTTTCGAATACAATTCAGCTACTGGAGCATTCAATCCAGATAGAGTCGCTGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTTCAGTGTGAAGGCTGCAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTTCTGTGAAAGTTGTTCTGCGGAAGATCCAAATAAGTTGGCAAATTCTCATGCGAGGCATTCAGATACAAAGGTGGATACAAAACGCCGTCGAAGGTGA 645 0.4744 MAKPKAPRRTLESYTVKHINKTVKPGDCVLMRPSEPSKPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEDPNKLANSHARHSDTKVDTKRRRR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0140 214 Pfam BAH domain 22 136 IPR001025 GO:0003682
Mibi03g0140 214 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Mibi03g0140 214 MobiDBLite consensus disorder prediction 193 214 - -
Mibi03g0140 214 Gene3D - 2 133 IPR043151 -
Mibi03g0140 214 FunFam Chromatin remodeling protein EBS 1 133 - -
Mibi03g0140 214 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Mibi03g0140 214 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Mibi03g0140 214 SMART PHD_3 141 188 IPR001965 -
Mibi03g0140 214 Pfam PHD-finger 141 189 IPR019787 -
Mibi03g0140 214 SMART BAH_4 21 137 IPR001025 GO:0003682
Mibi03g0140 214 SUPERFAMILY FYVE/PHD zinc finger 131 192 IPR011011 -
Mibi03g0140 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 205 IPR013083 -
Mibi03g0140 214 PANTHER OS08G0421900 PROTEIN 5 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0140 Mibi-ChrMibi03 1437704 1441404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0140 31 139 Core DNA Replication Machinery Family AT4G14700 29.358 5.83e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi03g0140 BAH 1e-22 No_clan