Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi03g0136 | ATGGCTTCCGATTCTTCCCCTCCGAATTTCAACAACGGTCCTTCCTCTCCCGATGATTCACTTTCAAGCCCAATCGGCAACACATTATCCTCTCCCGGAGAAGCCACTCGCGGAAGAGGCAGACGGCGTTCGTCGACGCCGTCTGTTTTCGCTACTCCGCCGTCAAATCGATCTCGATTCGCTTCCTCCGATGCTTCCCCAACTCCATCTAGGTCTAGGCAAAGAGGAAGTGGGCGGCGATCGTCTATGTCCACACCTATTGCGGCCACACCTACATCCACTGATGACGTGGCAATGTCTTCAGAAGGCGGAGAGGGTTATAATGGAGATGACGTCAGGCCTACCTTCGTTTGGGGTACTAATATAAGTGTTGAAGATGTGAATGAGGCTATTCAGAGGTTTTTGAAGCATTTTAGAGAGCAGTCGTTTCAGACTCAGAGTGATGGGTTGCTTATGGAAGGGAAGTATGAGATTGCTATTAAACATGTTATTGAACTTGAGGGGGATTCACTGGATGTGGATGCACGTGATGTGTTTGATTATGATCCGGATTTGTACACGAAAATGGTTAGATATCCGCTTGAGGTTCTTGCGATTTTTGATTTGGTTCTGATGAATATGGTCAGTAGAGTCAATCCGCTGTTTGAGAAGCATATTCAAACTCGAATTTTTAATCTAAAAACCTCGACTTCGATGAGGAATTTGAATCCATCTGGTGAGCTTGATATTGAGAGGATGGTATCATTGAAGGGAATGATTATTCGATGTAGCTCAATTATACCAGAAATCAGGGAAGCGATATTTAGATGTCTCGTGTGTGGATATTGCTCAGACCCGATTGCTGTTGAGAGAGGGCGAATAGCTGAACCAACCAAATGTCCGAGGGAAGAGTGTCAGGCGAGAAACTCTATGTCACTGGTTCACAACCGGTGCAGTTTCACAGACAAGCAAATTGTGAGGCTCCAGGAGACACCTGATGAGATACCTGAAGGGGGAACGCCACACACTGTAAGCTTGCTGGTGCATGACAAGCTGGTGGATGCTGGAAAGCCGGGTGACAGAGTTGAGGTGACTGGTATATATAGGGCTATGAGTGTCAGGGTTGGACCAACTCAAAGAACTGTTAAATCACTGTTCAAGACTTATATTGACTGTCTTCATATCAAGAAGACTGACAAGTCAAGAATGCTGTCAGAGGATTCAATGGATGTTGAAACTAGCCTGGGCAACCGTAATACTGAAGAAATTCATTTCGATGAACAAAAGGTGGCTCAACTAAAAGAGCTCTCAAAACAGCCTGATATATATGAAAGGCTGACAAAGTCATTGGCTCCAAACATCTGGGAGCTAGATGACGTAAAGAAAGGCCTTCTTTGCCAGCTTTTTGGTGGAAATGCTTTGAAGTTGGCATCCGGTGCTAATTTCCGTGGTGATCTTAATATCTTACTAGTTGGTGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAATACATACATAAGCTCTCTCCACGTGGCATTTACACTAGTGGAAGGGGGAGCTCTGCTGTTGGACTGACTGCTTATGTTGCCAAAGATCCTGAAACAGGCGAAACGGTTCTTGAGAGTGGCGCCCTAGTTTTAAGTGACAGAGGCATCTGCTGTATAGATGAATTTGACAAAATGTCTGAGAATGCCAGGAGCATGTTACATGAGGTGATGGAACAACAGACTGTTTCAATAGCAAAAGCAGGTATTATTGCCTCCCTCAATGCCAGGACTTCAGTGTTGGCTTGTGCGAACCCCAGTGGGTCGCGATATAACCCTCGCTTGTCTGTCATTGACAACATACAGCTTCCTCCTACACTTCTGTCCAGGTTCGATTTGATCTACTTAATTCTTGACAAGGCTGATGAACAGACAGATAGACGACTTGCCAAGCATATCGTTTCCTTGCACTTTGACAATCCTGAGAGCTTAGAGCAAGATGTGTTGGATCTCCCTACGTTAACTACTTATGTGAGTTATGCTCGAAAGCATATACATCCACAACTATCTGATGAAGCTGCTGAAGAATTGACCAGAGGTTATGTTGAGATACGGAGGAGAGGAAATTTTCCAGGGAGCAGCAAGAAGGTGATAACAGCAACACCAAGGCAGATTGAGAGTCTACTACGTCTTAGTGAAGCCTTGGCTCGGATTCGCTTCTCAGAATGGGTGGAAAAGCGGGATGTAATGGAGGCATTTCGGCTTCTAGAAGTTGCAATGCAGCAGTCTGCCACAGATCACTCTACTGGAACCATTGACATGGATCTTATCACTACCGGAGTTTCTGCAAGTGAAAGGATGAGACGAGAAAGTCTGGTGCAAGCAACTCGCAATATAATCATGGAGAAGATGCAAATTGGGGGCCCATCAATGCGGTTATTAGAGTTACTGGAAGAGTTGAAGAAACAGAGCACCATTGAACTCCATCTCAGTGATGTAAGAAATTCAGTTGCTACTCTGGCCAGCGAAGGTTTTGTTGCTCTGCATGGTGACAGTATAAAAAGATCGGCCGCTAAGTTGTGCGACTCAAGGTTATCTTGGGTGGTTGGAAGGATGGAATACGAGTTGACCGGCACAGCTTCTATAGTTATTTTACTGAATGTATTTTAA | 2634 | 0.4525 | MASDSSPPNFNNGPSSPDDSLSSPIGNTLSSPGEATRGRGRRRSSTPSVFATPPSNRSRFASSDASPTPSRSRQRGSGRRSSMSTPIAATPTSTDDVAMSSEGGEGYNGDDVRPTFVWGTNISVEDVNEAIQRFLKHFREQSFQTQSDGLLMEGKYEIAIKHVIELEGDSLDVDARDVFDYDPDLYTKMVRYPLEVLAIFDLVLMNMVSRVNPLFEKHIQTRIFNLKTSTSMRNLNPSGELDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYCSDPIAVERGRIAEPTKCPREECQARNSMSLVHNRCSFTDKQIVRLQETPDEIPEGGTPHTVSLLVHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMLSEDSMDVETSLGNRNTEEIHFDEQKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDLNILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIQLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPESLEQDVLDLPTLTTYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLLRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLVQATRNIIMEKMQIGGPSMRLLELLEELKKQSTIELHLSDVRNSVATLASEGFVALHGDSIKRSAAKLCDSRLSWVVGRMEYELTGTASIVILLNVF | 877 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi03g0136 | 877 | Pfam | MCM OB domain | 242 | 364 | IPR033762 | - | |
| Mibi03g0136 | 877 | MobiDBLite | consensus disorder prediction | 42 | 99 | - | - | |
| Mibi03g0136 | 877 | ProSitePatterns | MCM family signature. | 544 | 552 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 588 | 600 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 615 | 623 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 476 | 491 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 536 | 550 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 564 | 577 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g0136 | 877 | FunFam | DNA helicase | 262 | 314 | - | - | |
| Mibi03g0136 | 877 | Pfam | MCM P-loop domain | 423 | 645 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g0136 | 877 | ProSiteProfiles | MCM family domain profile. | 435 | 641 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g0136 | 877 | Gene3D | - | 262 | 314 | - | - | |
| Mibi03g0136 | 877 | Gene3D | - | 754 | 836 | IPR036388 | - | |
| Mibi03g0136 | 877 | Gene3D | - | 121 | 226 | - | - | |
| Mibi03g0136 | 877 | Gene3D | - | 413 | 753 | IPR027417 | - | |
| Mibi03g0136 | 877 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 128 | 806 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g0136 | 877 | FunFam | DNA helicase | 416 | 754 | - | - | |
| Mibi03g0136 | 877 | Pfam | MCM AAA-lid domain | 661 | 747 | IPR041562 | - | |
| Mibi03g0136 | 877 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
| Mibi03g0136 | 877 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 446 | 761 | IPR027417 | - | |
| Mibi03g0136 | 877 | SUPERFAMILY | Nucleic acid-binding proteins | 150 | 385 | IPR012340 | - | |
| Mibi03g0136 | 877 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Mibi03g0136 | 877 | CDD | MCM4 | 438 | 747 | - | - | |
| Mibi03g0136 | 877 | Gene3D | - | 233 | 374 | IPR012340 | - | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 451 | 462 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 308 | 320 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 597 | 614 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 257 | 270 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Mibi03g0136 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 749 | 758 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Mibi03g0136 | 877 | SMART | mcm | 228 | 749 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g0136 | 877 | Pfam | MCM N-terminal domain | 129 | 223 | IPR027925 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi03g0136 | Mibi-ChrMibi03 | 1391991 | 1397417 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi03g0136 | 1 | 843 | Core DNA Replication Machinery Family | AT2G16440 | 75.029 | 0.0 | 1273 |