Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0123 ATGACAAACCCTTCAGATGATCCTCCCTCGCCTTCCGCCGTCGAACACATCTCACTCGCCGGAAGAGATGACGGCAATGATACACAGTCTCTCGTACACTGTGACGAAGCGGAAGAGAAGCCACCCTCTCCTTCTGTTACACCTACTTACAGGGAAGTGTCAGAGGATATCAAAGTAGCTGACAATACTGTGGAGACTCAGAGGTTGGAGGAGGAGGCAATTGAGGCTGTCATGTCAAATGAGAATGAGGAATTCGAGGAAGCAGTTATGGGAATGGAGACAGCAGACGCGTATGCAGCTTGCAGATTAAGTGAGGCAGCTGAAGCAGCGGAGGTATGGAAGGTGGAAGAGGACAACCATGGAGCTAAAGCTGAGGACCTTACAAAGGCAGAGGAGGAGGCAGGTGAGGCTGTCATGTCAAATGAGAATCAGGAATTCGAGAAAGAATTCGATAAAGTAGTTATGGGAATGGAGACATCAGACGCGTATGCAGCTTGCAGATTTCGTGAGATAGCTGAAGCAGAGGAGGCATGGAAGGTGGAAGAGGAAATCTATGGAGCTAATGCTGAGGATATTACAAAGGCAGAGGAGGAAGCCAATGTAACTAACACTGCCGAGGACATTACAAAGGTGGAAGAGGAAACTGGTGTAGCTAACATTGCCGATGATTATACAAAGGTGGAAGAGGAAACTCATGATGCTATCAATGCTGATGATAATACAAAGGTGGAAGAGGAAACTGATGATGCTAACGCTGCCGATGATAATACAAAGGTGGAAGAGGAAACTGGTGATGCTAACATTGCTGATGATAATACGAAGGTGGAAGAGGAAACTGAGGTTGCTAACATTGCTGATGATAATACAAAGGTGGAAGAGGACGCTGACGTAGCTGACATCGCTGAGGACATTAAAAAGGTGAAAGAGGACGCAGATGTAACTGACATTGTCGACGGTGAGGTAGATGAGGCTGCCATGCCATATGAGAAAGAAGAAGCAGAAGAAGTTGTAGCTAGGATGGAGCCAGCAGACACACATGTGGCTTGTTCCCCAGGTGAGACAACTGGAGCAGTAGAGATTAGGGAGGTGGATGAAGCGGCAGGTGAAAATGGCATGCCAGATGAGAATGAGGAAGCTGAGAAAGTGGCAGTGGGGATGGAGATGGGAGATGGATCTGTGCCTGACACCCTTGATGAGCCAACTGAAGCAGATGGAGTTGGCATGGGGGCTGAAGATGAGGAGGAGGAAGCAGAGGAGTTGAATGCGGTTGGTACAGCAGTGGAAGGTACAACTGACACAGAAGAGGATGCAGATGAAGCTGGTGGAAGGGAGGAGGCTCTAGAGGCAGAAGAGGTGGAGGTAGCCAATGAAGCAGATTTGATGGAAGAGGAAGTAGATGGTGCTGAAATGGCAGAATATGCCGGGAGTGCTGAATTGAATGAGGAGACGGAGATGGAGATAGCTGAGGAGGAAGGTAGAAGTGTCAGCAGTGGCAAGAGGAAGCGTGGGAAGAACTCAAAGTCTGCAGCTAGAGTTCCAGTTAGAAAAAAGATGGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGTGAGCTTGTGCTTTGTGACCGCAGGGGATGCCCAAAGGCTTACCATCCTACATGTGTTAATCGTGATGATGCATTCTTTCGGGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGGGAAGAGTTCTTACTACATGTGCTATACCTGTACGTTCTCTTTGTGCAAGGGGTGCACCAAAGATGCTGTCATCTTGTGTGTTAGGGGAAAGAATGGCTTTTGTGAGACATGCATGAGGACTGTGATGCTGATTGAACAGAATGAACTCGGTAGCAAGGATTCGGGACAAGTTGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACACAGATCTAAAAGGGAAGCTATCTTTAACATATGATGAGCTTGCTCAAGCTAAAAACCCATGGAAGGGATCTGATATCCTTACCAAGCAAGAATCACCCGATGAGCCCTATGAGGCTAATAATGATGGGGGATTACATTCAGATAGCTCTTCTGAAAATATAGGGAGTAGTAGTGTTAAAAGAAGAAAGGCCAGTAAACGATTGAAGTCCCGTTCGAACAGGGTGAATTCACGTAGTACAATGACATCGACTGGTGACAAAGGGGCATATGCAGATGAGAGGTCTGATTGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGTGACAAATCTATTCTGTCTCAGTTTGATGTGCAGGCTCTTCTGCTAGAGTATATTAAAAGAAACAAGCTCCGTGATCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAGAATTTGTTTGGTAAACCAAGAGTGGGTCATTTTGAAATGTTAAAGCTTCTTGAATCCCACTTCCTATTAAAAGAAGATTCTCAGACTGAGGACCAACAGGGGAGTGTTGTTGATACTGAAGTAAATCATTTGGAAGGTGATGGCAATATTGATTCCTATCAAAAGACTGGAAAAGACAAGAGACGCAAAACACGAAAAAAAAGTGATGAAAGAGGACTTCAATCCAATACTGATGATTACGCAGCTATTGATAATCATAACATTAATTTAATTTATCTAAGACGCAATTTGGTGGAAGAATTACTTGAAGATACGGATAAGTTTCATGATAAAGTTGTTGGGTCTTTTGTAAGAATAAGGATCTCTGGCAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAAGCAGCTGAACCATATAAAGTTGGTAAAAGGATGACAGATACCTTGCTTGAAATCTTAAATTTAAGCAAGACAGAGATTGTATCGATCGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGTCTCCGTCAGAGTATAAAGTGTGGGTTGATCAATCGGCTGACAGTGGGTGACATTCAAGACAAAGCAATGGCACTGCAAGCGGTCAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGAGGCTAAGTCACCTCCGTGATAGAGCCAGTGAGAAAGGACGGAGAAAAGAATATCCTTCTAAATTGCAGCTTTTAAAAACACCTGAGGAACGTCAGCGAAGATTGGAGGAAATTCCAGAAATACATGCAGACCCAAACATGGATCCAAGTTATGAGTCTGAGGAAGAAGAAGAAACTGTTCCTAAACGATCAGAGAGTTACATGAGACCTAGAGGAATTGCATTTGATCGAAGGGGGAGAGAAACTGTTTCTCCTAGAACAGGCGGTTCTAATTCAAATGAGTCATGGAGTGGAGCTAGGAACTATTCTAATATGAATCGTGAGCTAAGCAGGAATTTGTCAAATAAAGGACTCTCAGTTAAATTTGATGGTGCGTCTAGTGCCTCTGAGGTATTGAATGATGTTCAAATGCTCCGGGGTAGAGAGAGTGAAACACAGCCATCTAATAGCTGGGAGGGGCAAAAGCTATATTCAAGCTTAGATAGTGGCAAAAGTATCCAGCCTGTGGTAGCATCCGAGCCTCTTTCTACTACTATGCCCAATGCTTCTGCTGCATCGTCAACTGGCATAGCATTGCCTGCTGTGAAAATTAATGAAACAGAAAAGATGTGGCATTATAAGGATCCATCTGGAAAAGTACAGGGACCATTTTCAATGGCACAGTTACGTAAATGGAATAACACTGGATATTTTCCTGCTGATTTGAGAATTTGGAGAACCCCTGAGAAACCAGATGAGTCTTTACTCTTAACCGATGCCTTAGCTGGAAACTTTTCTAAGGAGCCATCAGCTGTGGATAAAACTTTTCCAATGGCTCAGACAGCGCATAATTTAAATTATGGAGCCTCACCCTCCGGGAAGCTTCATTTGCCAGCACAACAAGGTGTAGATGCTCAAGTTGGTGGAAGATCTACATTTGATCGGAGTAGTGGGTTCTATAATTCACATAATGCTATGGGTTCTCTAGGCCAAGCTACTGGAGGAAATTGGAGATATGAAGATAATAATTCTGTAGCAAATAGGCCTCCTCCAATGACAGTTGAGATTCCCAAGATCCCTACAAGTGTGCGGGGGCCTGATGTTGGTATTAGAATTGAATCAACGAATCTTCCTTCACCTACTCCTCAGACTACCTCTTATGGGACTAAAGAGCATGCTTTTGAAAATAAATGGTCACCAACTCCCGTACACTCAACTGGTTCTCTTGTAGGGAGTCCTTTTCCTGGAGGCCATGGAGGCATGCAGACCCATGTCGCTGTAGAGAAAGTGGTGCGAAGTGCTGAAAGTGGTTCAAGTTCACAAACAGCTCAGATTCCAGCCCCAAATGCCGGTATACCTCATGGTCATCCTCAAGCAACAATGGTGGCACCTATTACAGCGGATGCCTCAAGAAATACAGGCGCTGACATTAAAATTGCAAGTATGCAAAACCTTGCTGTGAGCGACCATAATTCTCATGCTGAAGCTCAAGGTTGGGGATCTGGATTAGTTCAGAAGCCTGAAATGGCTGGTTCAATTCAGATACGAGGGGGTGAACCACAGGTCTGGGGAAGTGTCCATTCAAGGGTAGAATCAAATCATCCTGCTGCTATGCCTGCCCAACCCCTGTCGGCTCATGGCCACTGGACCGATGCTTCATCTATCCAGAATGCTGCCTCATTTAACTCTGGAAATCCTATGGGGAATTTACCCATGCCAGGCATGCAAGACTCGAGACCACCAACTTCAAGTAATCAACCTAACATTCCTGCTGCTCTGCCAGCTAACATGCCTTGGGGCATGACTGTTGCAGAAAATCAAAATACTAGTTGGGGGGTAATGTCTGGAAATCCAAATCTAAATTGGGGTGGACCTCCAGCTGCTAATATGAACATGAATTGGATGCCTGGCCAGGGTCCAGCACCAGGTAACGCAAATCCAGGATGGGCAGCTCCCAGTCAGGGACCATCTTCAGTAATCTCTACTGGTTGGGCTCAACCTGGTCAAGGCCATCCTAATGCTAATGGAGGTTGGGTTGTGCCTGGTCAAGGTTCGGCACCCGGTGGTGCTAATCCTGGTTGGGTTGCGCCGGCTGCGGGCCAAGGCATGTGGGGAAATGAACAAAATCATAATGGAGATAGGTTCCCAAACCAAAGGGATCGTGGTCCTCATGGTGGTGATAAAACATGGAACAGGCAGTCTTCGTTTGGTGGTGGTGCCAGCCGGGGAGGAGGTTCTTCCGGGCCTCCTTTTGGAACGCAAAGAGGAGTGTGCAAGTTCCACGAGAGTGGACACTGCAGGAAAGGAGCTTTTTGTGAGTATCTGCACACCTGA 5376 0.4544 MTNPSDDPPSPSAVEHISLAGRDDGNDTQSLVHCDEAEEKPPSPSVTPTYREVSEDIKVADNTVETQRLEEEAIEAVMSNENEEFEEAVMGMETADAYAACRLSEAAEAAEVWKVEEDNHGAKAEDLTKAEEEAGEAVMSNENQEFEKEFDKVVMGMETSDAYAACRFREIAEAEEAWKVEEEIYGANAEDITKAEEEANVTNTAEDITKVEEETGVANIADDYTKVEEETHDAINADDNTKVEEETDDANAADDNTKVEEETGDANIADDNTKVEEETEVANIADDNTKVEEDADVADIAEDIKKVKEDADVTDIVDGEVDEAAMPYEKEEAEEVVARMEPADTHVACSPGETTGAVEIREVDEAAGENGMPDENEEAEKVAVGMEMGDGSVPDTLDEPTEADGVGMGAEDEEEEAEELNAVGTAVEGTTDTEEDADEAGGREEALEAEEVEVANEADLMEEEVDGAEMAEYAGSAELNEETEMEIAEEEGRSVSSGKRKRGKNSKSAARVPVRKKMEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGKWNCGWHLCSNCGKSSYYMCYTCTFSLCKGCTKDAVILCVRGKNGFCETCMRTVMLIEQNELGSKDSGQVDFDDKSSWEYLFKDYYTDLKGKLSLTYDELAQAKNPWKGSDILTKQESPDEPYEANNDGGLHSDSSSENIGSSSVKRRKASKRLKSRSNRVNSRSTMTSTGDKGAYADERSDWASKELLEFVMHMRNGDKSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDQQGSVVDTEVNHLEGDGNIDSYQKTGKDKRRKTRKKSDERGLQSNTDDYAAIDNHNINLIYLRRNLVEELLEDTDKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLSKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMALQAVRVKDWLETEIVRLSHLRDRASEKGRRKEYPSKLQLLKTPEERQRRLEEIPEIHADPNMDPSYESEEEEETVPKRSESYMRPRGIAFDRRGRETVSPRTGGSNSNESWSGARNYSNMNRELSRNLSNKGLSVKFDGASSASEVLNDVQMLRGRESETQPSNSWEGQKLYSSLDSGKSIQPVVASEPLSTTMPNASAASSTGIALPAVKINETEKMWHYKDPSGKVQGPFSMAQLRKWNNTGYFPADLRIWRTPEKPDESLLLTDALAGNFSKEPSAVDKTFPMAQTAHNLNYGASPSGKLHLPAQQGVDAQVGGRSTFDRSSGFYNSHNAMGSLGQATGGNWRYEDNNSVANRPPPMTVEIPKIPTSVRGPDVGIRIESTNLPSPTPQTTSYGTKEHAFENKWSPTPVHSTGSLVGSPFPGGHGGMQTHVAVEKVVRSAESGSSSQTAQIPAPNAGIPHGHPQATMVAPITADASRNTGADIKIASMQNLAVSDHNSHAEAQGWGSGLVQKPEMAGSIQIRGGEPQVWGSVHSRVESNHPAAMPAQPLSAHGHWTDASSIQNAASFNSGNPMGNLPMPGMQDSRPPTSSNQPNIPAALPANMPWGMTVAENQNTSWGVMSGNPNLNWGGPPAANMNMNWMPGQGPAPGNANPGWAAPSQGPSSVISTGWAQPGQGHPNANGGWVVPGQGSAPGGANPGWVAPAAGQGMWGNEQNHNGDRFPNQRDRGPHGGDKTWNRQSSFGGGASRGGGSSGPPFGTQRGVCKFHESGHCRKGAFCEYLHT 1791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0123 1791 CDD GYF 1222 1277 IPR003169 GO:0005515
Mibi03g0123 1791 Pfam Plus-3 domain 884 987 IPR004343 GO:0003677
Mibi03g0123 1791 Coils Coil 444 464 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 405 421 - -
Mibi03g0123 1791 SMART rtf1 879 989 IPR004343 GO:0003677
Mibi03g0123 1791 Coils Coil 194 214 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 1358 1379 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 391 447 - -
Mibi03g0123 1791 Gene3D - 1223 1282 IPR035445 -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 670 736 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 1 29 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 1099 1122 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 1679 1764 - -
Mibi03g0123 1791 SUPERFAMILY SWIB/MDM2 domain 743 819 IPR036885 -
Mibi03g0123 1791 FunFam Zinc finger CCCH domain-containing protein 19 880 1009 - -
Mibi03g0123 1791 SUPERFAMILY Plus3-like 880 1009 IPR036128 GO:0003677
Mibi03g0123 1791 CDD PHD5_NSD 522 567 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 1105 1122 - -
Mibi03g0123 1791 ProSiteProfiles Zinc finger C3H1-type profile. 1766 1791 IPR000571 GO:0046872
Mibi03g0123 1791 SMART swib_2 752 823 IPR019835 -
Mibi03g0123 1791 Gene3D - 881 1009 IPR036128 GO:0003677
Mibi03g0123 1791 Pfam SWIB/MDM2 domain 745 818 IPR003121 -
Mibi03g0123 1791 SMART gyf_5 1223 1278 IPR003169 GO:0005515
Mibi03g0123 1791 Pfam GYF domain 1225 1265 IPR003169 GO:0005515
Mibi03g0123 1791 Gene3D SWIB/MDM2 domain 732 828 IPR036885 -
Mibi03g0123 1791 ProSitePatterns Zinc finger PHD-type signature. 523 583 IPR019786 -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 825 870 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 689 704 - -
Mibi03g0123 1791 SUPERFAMILY FYVE/PHD zinc finger 510 568 IPR011011 -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 239 264 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 1057 1085 - -
Mibi03g0123 1791 SUPERFAMILY GYF domain 1215 1275 IPR035445 -
Mibi03g0123 1791 CDD SWIB-MDM2_like 743 818 - -
Mibi03g0123 1791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 614 IPR013083 -
Mibi03g0123 1791 ProSiteProfiles Plus3 domain profile. 879 1012 IPR004343 GO:0003677
Mibi03g0123 1791 ProSiteProfiles GYF domain profile. 1222 1276 IPR003169 GO:0005515
Mibi03g0123 1791 FunFam Zinc finger CCCH domain-containing protein 19 729 825 - -
Mibi03g0123 1791 SMART PHD_3 522 568 IPR001965 -
Mibi03g0123 1791 PANTHER UNCHARACTERIZED 410 1791 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 1727 1741 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 1571 1602 - -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 431 447 - -
Mibi03g0123 1791 FunFam Zinc finger CCCH domain-containing protein 19 512 612 - -
Mibi03g0123 1791 ProSiteProfiles SWIB/MDM2 domain profile. 737 820 IPR003121 -
Mibi03g0123 1791 MobiDBLite consensus disorder prediction 477 511 - -
Mibi03g0123 1791 ProSiteProfiles Zinc finger PHD-type profile. 520 586 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0123 Mibi-ChrMibi03 1259005 1269978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0123 487 609 PHD Transcription Factor Family AT5G58610 28.358 3.72e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mibi03g0123 Plus-3 1.8e-23 No_clan