Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0118 ATGCGAACACTTTGTGATGTTTGCGAAAGTGCTGCTGCGATCATCTTCTGTGCTGCAGATGAGGCTGCTCTATGCCGTGCATGCGATGAAAAGGTCCATACATGCAACAAGCTAGCTAGTAAACATGTGCGAGTTGGGTTGGCTGACCCCACTGATGTTCCCCGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGGTAGATGGTAGTTCGTTGTGTCTGCAATGTGACATGATAGTACATGTTGGTGGTAAAAGAATGCATGAAAGATATCTTCTATTGAGGCAAAGAGCTGAGTTTCCTGGTGACAAACCTGGTGGATTGGAAGAACTGGGGCTGCAACCCCTTGATCAAAATGAATTAAAGAAGGACCAAAGCCTAGCCCTTAGGCTAATTACAAGAGATAACCAGCAGAACCATAAGGTCTCACCTGCTTCAATTCAAGAAAATAATGTTGATGATCATGGAAAGATGGATAAAAAACTAATTGATCTTAATACTAGACCACAACGGTTAAATGGACCAACATCAAACAACCAGGAACTTGAACACGAACCGGCCATGGATATTTCAAGTGGCAATAATGATATATCTGTGGTACCAGTAGAATCCTTCAAACGTGATGTTGTGAAAAAATAA 648 0.4198 MRTLCDVCESAAAIIFCAADEAALCRACDEKVHTCNKLASKHVRVGLADPTDVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGGKRMHERYLLLRQRAEFPGDKPGGLEELGLQPLDQNELKKDQSLALRLITRDNQQNHKVSPASIQENNVDDHGKMDKKLIDLNTRPQRLNGPTSNNQELEHEPAMDISSGNNDISVVPVESFKRDVVKK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0118 215 MobiDBLite consensus disorder prediction 172 199 - -
Mibi03g0118 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mibi03g0118 215 MobiDBLite consensus disorder prediction 170 199 - -
Mibi03g0118 215 SMART bboxneu5 1 47 IPR000315 GO:0008270
Mibi03g0118 215 SMART bboxneu5 51 96 IPR000315 GO:0008270
Mibi03g0118 215 CDD Bbox1_BBX-like 56 96 - -
Mibi03g0118 215 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Mibi03g0118 215 FunFam B-box zinc finger protein 19 2 92 - -
Mibi03g0118 215 Gene3D Classic Zinc Finger 2 93 - -
Mibi03g0118 215 CDD Bbox1_BBX-like 4 47 - -
Mibi03g0118 215 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Mibi03g0118 215 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Mibi03g0118 215 Pfam B-box zinc finger 53 85 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0118 Mibi-ChrMibi03 1220869 1222722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0118 1 214 C2C2-CO-like Transcription Factor Family AT4G38960 57.870 6.01e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mibi03g0118 zf-B_box 8.5e-07 No_clan