Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0070 ATGGGTGATAGGGTTACAGGGAAGGTGAAATGGTTCAGCGACCAGAAGGGTTTTGGTTTCATTACCCCTGACGATGGCGGCGAGGACCTTTTCGTTCACCAATCTGCGATCCGTGCTGATGGTTTTCGCAGTCTCGGCGATGGCGAATCTGTCGAGTTCCTCATCGAGTCCGACTCCGATGGCCGCTCCAAGGCCGTCGATGTCACCGGTCCTTCTGAGGGCGATGTCCAGGGAAGCCGTCGCGGCGGCGGCGGCGGCGGAGGCGGAGGCGGCAGATCCTACGGTGGTGGCGGCCGTGGAGGCGGTTTCGGCGGCAGCTACGGTGGCGGCGGTTACGGTGGTGGAGGTCGCGGTGGAAGAGGTGGAGGTGGTGGTGGTTATGGCGGTGGAGGCGGCGGTGGAGGTTGTTATAACTGTGGTGAGGTTGGTCATCTTGCTAGGGATTGCTACCAGGGCGGCGGCGGAGGCGGTGGGGGAAGGTACGGAAGCGGTGGTGGCGGAGGAGGCGGCGGCGGCGGAGGCTGCTACACGTGTGGGGAGTCTGGGCATTTTGCTAGGGACTGTCCAACTGGTGCTCGTTGA 582 0.634 MGDRVTGKVKWFSDQKGFGFITPDDGGEDLFVHQSAIRADGFRSLGDGESVEFLIESDSDGRSKAVDVTGPSEGDVQGSRRGGGGGGGGGGRSYGGGGRGGGFGGSYGGGGYGGGGRGGRGGGGGGYGGGGGGGGCYNCGEVGHLARDCYQGGGGGGGGRYGSGGGGGGGGGGGCYTCGESGHFARDCPTGAR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0070 193 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Mibi03g0070 193 SMART c2hcfinal6 135 151 IPR001878 GO:0003676|GO:0008270
Mibi03g0070 193 SMART csp_8 6 71 IPR011129 GO:0003676
Mibi03g0070 193 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Mibi03g0070 193 Gene3D - 171 193 - -
Mibi03g0070 193 Gene3D - 132 158 - -
Mibi03g0070 193 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Mibi03g0070 193 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Mibi03g0070 193 SUPERFAMILY Retrovirus zinc finger-like domains 126 191 IPR036875 GO:0003676|GO:0008270
Mibi03g0070 193 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Mibi03g0070 193 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Mibi03g0070 193 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Mibi03g0070 193 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Mibi03g0070 193 ProSiteProfiles Zinc finger CCHC-type profile. 136 149 IPR001878 GO:0003676|GO:0008270
Mibi03g0070 193 ProSiteProfiles Zinc finger CCHC-type profile. 175 189 IPR001878 GO:0003676|GO:0008270
Mibi03g0070 193 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Mibi03g0070 193 Gene3D - 2 82 IPR012340 -
Mibi03g0070 193 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 190 - -
Mibi03g0070 193 MobiDBLite consensus disorder prediction 56 100 - -
Mibi03g0070 193 Pfam Zinc knuckle 135 149 IPR001878 GO:0003676|GO:0008270
Mibi03g0070 193 Pfam Zinc knuckle 174 189 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0070 Mibi-ChrMibi03 853768 854349 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mibi03g0070 CSD 5.9e-26 CL0021