Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g0042 ATGGATTTTGATGAATATGAATACTTAGAAAAGACAGTTGAGAATCCTGAACTTCAGAGGAAGGAGAAAACTAATGGTAGTGATGGAACTGTAAAAGCTGAGGAGAGAGATCATAAGTGGAGTTCAAAGCATAAAGCTACTGACAAGCTTGATGATGTTGATCGCTATTCCAAGAAATTAAAATATAGAGATGGTTTTCATGGTAATGACAATCACAAAGAAAGAGGGTCATCTCGGCATCGTTCACCATCTAGAGATGGAGACAAGGAGAAAGATCTGCACAGAAGCATGCATGATAATAGGGATAGGGTGAGAGATCAAGATAGAGAAAGAGACAAGGAGGAGAAACATAGTAGAGTGAGAGACAGACACCATGAACATGACAGTGGCCGAGAAAGAGACAAAAGAGACCGGGGGAGTGAGAGTGCAAGAGAAAGAGAGAGGGACCACCCACGGCGAAGCAGAAGTATATCTGAAAGGGATAGAGAGAGGAGTCATGATAGAGAGTATAGAGACAGGGAAAGAAGCAGGGACAAGGATTACAAAGATAGAGAAAGGGAGAGAGAATCAAGGGAGCAGGATAGAGATAGCAGACGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGCAGACCCTGAACGGGATCAGAGGACGGTGTTTGCTTATCAGATTTCTCTGAAGGCAGATGAAAGAGACGTGTACGAGTTCTTTTCAAGGGCTGGAAAGGTGCGAGATGTTCGCCTGATAATGGACCGCAACTCCCGTCGATCTAAGGGTTTTGGGTATATCGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTAGCCAACTACTTCTTGGCCAGCCTGTGATGGTGAAGCCATCAGAAGCAGAAAAGAACTTGGTTCAGTCTACTGCATCTGTATCTAGTGGGTCAACTGGACACATGGGCCCTTATTCTGGGGGAGCAAGAAGGCTTTATGTTGGCAATTTGCATTTCAGTATCACTGAAGCTGATATTCGTGGGGTTTTTGAAGCATTCGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGACGCAAGGAATGCCCAGAGCTTAAATGGACAACTGGAAATTGGTGGCAGGACAATAAAGGTAACTGCAGTTACTGATCAAACCGGAATGCAAGATGTTGGAGGAAATACTGGTGATTTTGATGATGATGATGGTGGCGGCTTGTCTCTAAACGCTTGTTCTCGGGCATTACTCATGCAGAAGTTAGATCGTAGTGGCACTGGATCAGGCATTACTAGTTCCCTAGGTAATTCTGTTGCCAACAACACAGGCCTTAACGTACCAGCTACAATTCCTTCAGCAGCTGGGATACCAGGTGGAAGTCTACAAATTCCCACTGCCACCGCTACAATCCCCACTATTGATACAATTGGTGCTCCGAGTGAATGCTTATTGTTAAAAAATATGTTTGATCCCAAAGATGAGAAGGAACCGGACTTTGATTTGGATATTAAAGAAGATGTTGAAGCTGAATGCTCTAAGTTTGGAAGGTTAAAACATGTATACGTCGACAAGAACACTGCTGGCTTTGTCTACCTACGATTTGAAAATACTCAAGCTGCTATAAATGCACAGCGTTCTCTGCATGGGAGGTGGTTTGCTGGGAAGATGATCACTGCTAGCTATATGGTGCCTCAGTTATATGAGGATAAGTTTCAAGACAGCAGATAG 1773 0.4422 MDFDEYEYLEKTVENPELQRKEKTNGSDGTVKAEERDHKWSSKHKATDKLDDVDRYSKKLKYRDGFHGNDNHKERGSSRHRSPSRDGDKEKDLHRSMHDNRDRVRDQDRERDKEEKHSRVRDRHHEHDSGRERDKRDRGSESARERERDHPRRSRSISERDRERSHDREYRDRERSRDKDYKDRERERESREQDRDSRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGFGYIEFYDVMSVPMAIALSSQLLLGQPVMVKPSEAEKNLVQSTASVSSGSTGHMGPYSGGARRLYVGNLHFSITEADIRGVFEAFGQVELVQLPLDETGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVTAVTDQTGMQDVGGNTGDFDDDDGGGLSLNACSRALLMQKLDRSGTGSGITSSLGNSVANNTGLNVPATIPSAAGIPGGSLQIPTATATIPTIDTIGAPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGRLKHVYVDKNTAGFVYLRFENTQAAINAQRSLHGRWFAGKMITASYMVPQLYEDKFQDSR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g0042 590 CDD RRM3_RBM39_like 495 577 - -
Mibi03g0042 590 FunFam CC1-like, splicing factor 318 426 - -
Mibi03g0042 590 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 414 514 IPR029123 -
Mibi03g0042 590 Gene3D - 492 590 IPR012677 -
Mibi03g0042 590 SUPERFAMILY RNA-binding domain, RBD 321 419 IPR035979 GO:0003676
Mibi03g0042 590 SUPERFAMILY RNA-binding domain, RBD 212 321 IPR035979 GO:0003676
Mibi03g0042 590 SMART rrm1_1 497 575 IPR000504 GO:0003723
Mibi03g0042 590 SMART rrm1_1 220 292 IPR000504 GO:0003723
Mibi03g0042 590 SMART rrm1_1 324 396 IPR000504 GO:0003723
Mibi03g0042 590 MobiDBLite consensus disorder prediction 1 217 - -
Mibi03g0042 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 496 579 IPR000504 GO:0003723
Mibi03g0042 590 TIGRFAM SF-CC1: splicing factor, CC1-like family 103 588 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mibi03g0042 590 SUPERFAMILY RNA-binding domain, RBD 493 576 IPR035979 GO:0003676
Mibi03g0042 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 394 IPR000504 GO:0003723
Mibi03g0042 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 572 IPR000504 GO:0003723
Mibi03g0042 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 287 IPR000504 GO:0003723
Mibi03g0042 590 CDD RRM1_RBM39_like 220 292 - -
Mibi03g0042 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 400 IPR000504 GO:0003723
Mibi03g0042 590 FunFam Splicing factor, CC1-like protein 491 590 - -
Mibi03g0042 590 Gene3D - 156 302 IPR012677 -
Mibi03g0042 590 Gene3D - 303 404 IPR012677 -
Mibi03g0042 590 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 588 - -
Mibi03g0042 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Mibi03g0042 590 SMART rrm2_1 497 575 IPR003954 GO:0003676
Mibi03g0042 590 SMART rrm2_1 324 396 IPR003954 GO:0003676
Mibi03g0042 590 FunFam RNA-binding protein 39 isoform X1 212 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g0042 Mibi-ChrMibi03 598728 609450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g0042 220 386 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 1.45e-12 68.6