Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3507 ATGAAGCAGCCAGAGGTTACCGGAGCTGGGGCTTCCTCAGCTGCTGCTCCACCTAACCCTTGCGAAGATTTTGTTGCCAAAGAAATATTGGTTAACATGCGTGAGTGTTCAACATGGGGCGCTGCAGCTGAGAAGAAGAGCATAAATCCGGAGCTCTGGCAAGCCTGTGCGGGGCCGCTGGTGAACCTGCCGCCAGCTGGTACTCACGTTGTGTACTTCCCTCAAGGTCACAGTGAGCAGGTTGCAGCATCTTTAAAGAAGGATGTGGATGGTCAGATCCCAAACTATCCAAACCTCCCTTCTAAATTACTCTGTCTCCTTCACAATGTCACCTTGCATGCTGACCCAGAAACTGATGAAGTATATGCTCAGATGACTCTTCAACCAGTGCCTTCTTTTGACAAGGATGCATTGTTAAGGTCTGATCTTGCTCTCAAGTCAAGTAAACCGCAGCCTGAGTTCTTCTGTAAGCAATTGACGGCGAGTGATACAAGTACACATGGAGGTTTTTCTGTCCCACGTCGTGCAGCAGAGAAGATTTTCCCTGCTCTTGATTACTCTATGCAACCTCCTGCTCAAGAACTTGTGGCAAGGGATTTGCACGACAATGTCTGGAATTTTCGTCATATATACCGTGGACAACCTAAGCGTCACTTACTTACAACTGGATGGAGTCTATTTGTCAGTGGGAAGAGGCTGTTTGCTGGAGACTCTGTTCTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTCTTGGTATCAGGCGAGCTAACAGACAACCCACTAATATATCATCTTCGGTGCTATCAAGTGATAGTATGCATATTGGAATTCTGGCAGCAGCAGCTCATGCGGCTGCAAACAACAGCCCCTTCACCGTGTTTTATAACCCTAGGGCTAGCCCCTCAGAATTTGTTATTCCTTTGGCAAAGTACTACAAGGCAGTGTATAGCCATCAAATATCCCCTGGCATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGTATATGGGCACAATAACGGGGATCAGTGACCTGGATCCTGTTAGATGGAAAAACTCGCAATGGCGCAATTTGCAGGTTGGCTGGGATGAATCAACTGCTGGAGAAAGACGAAGTAGGGTTTCAATCTGGGAAATTGAACCAGTGACAGCTCCATTTTTCATCTGCCCTCCTCCATTCTTCAGGTCCAAGCGACCAAGACAACCAGGAATGCAAGATGAAGATCCTTCTGATTTTGATAACCTTTTTAAGAGGACGATGCCTTGGCTTGGTGATGATATATGCATGAAAGATCCTCAAGCACTCCCTGGCCTAAGCTTAGTTCAATGGATGAACATGCAGCAAAATCCTGCTCTGTCTAGCTCATTGCAGCCAAATTACATGCAATCCTTGTCTGGATCTGTTCTGCAAAACCTTCCTGGTGCAGACATTGCCCGTCAGCTGGGATTTTGCGCTCCACAGATTTCTCAGTCAAGCAATGTAGCCTTCAATCCTCAGAGGTTACTTCAGATCCCACAACAAGTTGATCATCTTCAGAAGATGCCATCTTCGTCTAGTCCATTAGGACCAGCCATGCAGCCACCACAACAATTGGGTGACATCGCTCAGCAACCTAGACAACATATAGGAAATCAAACTCTACCACAGAGTCAAGTTCAGAGCCAACTACTGCAAACTCAAAATATTGTTCAGTCTAACAATATTCTTCAACAGCAGCAACCATCCATCCAAAATCAGCAACTGCATAGAAACCTCTCTCAGAATCTGTCACAGCCACAGCAGCAACAGGCAGTTATGGGTCAGAGTCAACTGCAGAATCTTATCCAGTCCTCAATGCCTGATCATGTCAATCAACAGTTGCAGATGCCTGACAACCAGATTCAGCTTCAATTATTACAGAAGCTTCAACAGCAACAGCAAACACTCTTGGCACAGCAGTCAGTATTACAGCAGTCTACGCAACTTAATCAAATCCAAGACCAGCAGAGGCAACTCTTAGATCCAACTCAGAACTTCTCGAAGGTCCTTACTTCAAGTCAAGTGCTTGAAGTTCCTCCAATACTTCAAAACTCACTTCCTGATTCTAATTCTATTCCACCTCAGATGATTAAGAATAATGGCCAGGCCAATAATGTTCAGTTCTCTCATCCAACCCAGCAGGCAAAGCTTCAACAACAGCAACCTGGCATACTGTCTGATCTGTCTGGGCATGCGGGTCTTCTCCCTGCTCCTACTGCCAATAAACTCTCTGCGGCTGGTAGTAGTATATTAACTGGAGCAGGGCAGTCTGGAATTACTGACGACATTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTGCCAATACTCTTCCGCATATGAATTCCCGGATCCATAAGAACATGGCGATAGGGGATGATATGGCTCAATCTGCAGCCACAATATTAAGTCCAAGTGTCTTGGAGACCATGTCATCAAATGCAAGCTTGGTGAAAAATTTTCAGCCAAAGTCTGAAGTCAAGCCTTCTTTAAATATATCCAAAAGTCAAAGCCAAGGGAATTTTTCTGCTCATGTATATTTAAATGGTGGAGCTGCGCAGACGGATTATTTGGATACATCATCTTCTACAACCTCAGTTAGCATTTCTCGGAATGACACTTATATGCATCAAAATAACAACCCGTTATCTTACAATCCGCAGTCAATGTTGTTTAGAGACAATAATCAAGATGGGGAAATTCAGCTTGATGCTAGGAGCAATGTTCCATTTGGCAATAATATTGATGGTCAATTGGGAATGCCGCTAAATCCTGATTCTCTTTTGACCAAAGGCACGATAGGGCTGGGAAAGGATTTGTCAAATAACATTTCAGGAGGCATGCTTGGTAACTATGAGGATAACAGAGATGCTCAGCAGGAACTTTCTTCATCAATTGTCTCACAGACATTTGGAGTTCCTGATATGACCTTTAATTCAATTGATACCACAATAAATGATGGTAGTTTCTTAAATAGGGGTACATGGGCACCACCTCCACCACCACTACCACAGTTTCAGCGGATGAGAACATACACCAAGGTATACAAACGTGGAGCTGTTGGTAGGTCTATAGACATAACCCGGTATACAGGTTATGAGGAGCTTAAACAGGATTTGGCTCGCAGATTTGGCATCGAGGGACAATTGGAGGACCGGCAAAGGATAGGCTGGAAACTTGTTTATGTAGATCATGAAAATGATGTGCTGCTAGTGGGGGACGACCCTTGGGAGGAGTTTGTGAACTGCGTCCGCTGCATTAAAATACTTTCTCCTCAAGAGGTGCAGCAGATGAGTTTGGATGGAGATTTTGGCAACGGTGGCCTTCCAAATCAAGCATGTAGCAGTTCTGATGGTGGAAATACCTAA 3405 0.4476 MKQPEVTGAGASSAAAPPNPCEDFVAKEILVNMRECSTWGAAAEKKSINPELWQACAGPLVNLPPAGTHVVYFPQGHSEQVAASLKKDVDGQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPALDYSMQPPAQELVARDLHDNVWNFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMQDEDPSDFDNLFKRTMPWLGDDICMKDPQALPGLSLVQWMNMQQNPALSSSLQPNYMQSLSGSVLQNLPGADIARQLGFCAPQISQSSNVAFNPQRLLQIPQQVDHLQKMPSSSSPLGPAMQPPQQLGDIAQQPRQHIGNQTLPQSQVQSQLLQTQNIVQSNNILQQQQPSIQNQQLHRNLSQNLSQPQQQQAVMGQSQLQNLIQSSMPDHVNQQLQMPDNQIQLQLLQKLQQQQQTLLAQQSVLQQSTQLNQIQDQQRQLLDPTQNFSKVLTSSQVLEVPPILQNSLPDSNSIPPQMIKNNGQANNVQFSHPTQQAKLQQQQPGILSDLSGHAGLLPAPTANKLSAAGSSILTGAGQSGITDDIPSCSTSPSTNNCANTLPHMNSRIHKNMAIGDDMAQSAATILSPSVLETMSSNASLVKNFQPKSEVKPSLNISKSQSQGNFSAHVYLNGGAAQTDYLDTSSSTTSVSISRNDTYMHQNNNPLSYNPQSMLFRDNNQDGEIQLDARSNVPFGNNIDGQLGMPLNPDSLLTKGTIGLGKDLSNNISGGMLGNYEDNRDAQQELSSSIVSQTFGVPDMTFNSIDTTINDGSFLNRGTWAPPPPPLPQFQRMRTYTKVYKRGAVGRSIDITRYTGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3507 1134 CDD B3_DNA 154 246 IPR003340 GO:0003677
Mibi02g3507 1134 Gene3D - 1017 1111 - -
Mibi02g3507 1134 Gene3D - 319 390 - -
Mibi02g3507 1134 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mibi02g3507 1134 Gene3D - 153 256 IPR015300 -
Mibi02g3507 1134 SUPERFAMILY CAD & PB1 domains 1038 1100 - -
Mibi02g3507 1134 FunFam Auxin response factor 153 257 - -
Mibi02g3507 1134 MobiDBLite consensus disorder prediction 514 536 - -
Mibi02g3507 1134 SMART B3_2 155 257 IPR003340 GO:0003677
Mibi02g3507 1134 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mibi02g3507 1134 Pfam AUX/IAA family 1022 1107 IPR033389 -
Mibi02g3507 1134 ProSiteProfiles PB1 domain profile. 1022 1106 IPR000270 GO:0005515
Mibi02g3507 1134 FunFam Auxin response factor 1017 1111 - -
Mibi02g3507 1134 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Mibi02g3507 1134 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Mibi02g3507 1134 FunFam Auxin response factor 319 390 - -
Mibi02g3507 1134 SUPERFAMILY DNA-binding pseudobarrel domain 144 284 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3507 Mibi-ChrMibi02 61555052 61561060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3507 43 513 B3 DNA Binding Superfamily AT1G19220 72.632 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mibi02g3507 B3 1.9e-19 CL0405