Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3483 ATGTCGTCTGATTCTGATGCGAATGATAATGATTCAGGTGGGAGTCCATTGGAATTGAACGACTCCCAAATGCGAAGACTGTCTGTGCTTCTGCCTCTGCTTCTGAGCGTATCGGGCCCAGATATGGATTCCCGTGGTGGGGTTCGGATCATCATAGTTGACCGTTCGGCGGGAGCGATGATGGTGATCGAAGGATCAGGGGATCTGCTGTCGGGGAAGGCAGGGGTGTTGCCGGCGTCGAAGGATTCGATTCGGGCGATGCCCAGAGTGGTGGTGACGGAACAAGGTACGGACTGTTCGATCTGCTTGGATGGTTACCAAGTGGGAGGGGAAGCGAGCCAAATGCCCTGCAACCATAAATTTCACTCTGCCTGTATTGAGAGGTGGTTAGGGATTCATGGGTCTTGCCCTATCTGCCGATTTGTCATGCCGGCCGAGGAGGAGGAGGAGGAGGACACTAGCATCGCCGTCAGCGAGGGGTTGGTATCGGTGAGTGTGTGGATGAGGTCAATGGACGAAGACGAAGATGGCGATGGCGATCCGATGGAAGTGGATTTGGAGCCGGATCATGGATCTGGGGGATCCAATGGTGATGATACACCAGAAGGAGAAGGGGATTCTGCGGTGGAGGATGAGTCGTGGATGATGCTTCAAGAGCCGGAAGACATGGAATTCTGA 678 0.5428 MSSDSDANDNDSGGSPLELNDSQMRRLSVLLPLLLSVSGPDMDSRGGVRIIIVDRSAGAMMVIEGSGDLLSGKAGVLPASKDSIRAMPRVVVTEQGTDCSICLDGYQVGGEASQMPCNHKFHSACIERWLGIHGSCPICRFVMPAEEEEEEDTSIAVSEGLVSVSVWMRSMDEDEDGDGDPMEVDLEPDHGSGGSNGDDTPEGEGDSAVEDESWMMLQEPEDMEF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3483 225 CDD RING-H2_PA-TM-RING 98 140 - -
Mibi02g3483 225 MobiDBLite consensus disorder prediction 171 225 - -
Mibi02g3483 225 SMART ring_2 99 139 IPR001841 -
Mibi02g3483 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 57 144 - -
Mibi02g3483 225 ProSiteProfiles Zinc finger RING-type profile. 99 140 IPR001841 -
Mibi02g3483 225 SUPERFAMILY RING/U-box 93 144 - -
Mibi02g3483 225 Pfam Ring finger domain 98 140 IPR001841 -
Mibi02g3483 225 MobiDBLite consensus disorder prediction 203 225 - -
Mibi02g3483 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 146 IPR013083 -
Mibi02g3483 225 FunFam E3 ubiquitin-protein ligase RNF181 69 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3483 Mibi-ChrMibi02 61211695 61212372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3483 25 149 C3H Transcription Factor Family AT1G26800 40.845 7.88e-27 100