Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3468 ATGGTCTCTTCCCTTTTTAATATCGGTCGATTCCCCTCCACGTCCCTTGTCGATTTGAGAATGGATGGTTCGACTGGCCGTGGCAGCAATGCAGATGTGATTTTACCTAACTATAAGTTGGGGAAAACACTTGGGATTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCATATATTGACTGGCCATAAAGTTGCCATTAAGATTCTTAATCGGCGCAAGATAAAGAATATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTGAGATTGTTCATGCACCCACACATCATACGTCTTTATGAGGTCATAGAAACCCCGACAGACATATATGTTGTTATGGAGTATGTGAAATCTGGTGAGCTCTTTGATTACATTGTGGAAAAGGGCAGGCTGCAAGAGGATGAAGCCCGCAACTTTTTCCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGAAATATGGTGGCTCATAGAGACCTTAAACCAGAGAATTTACTTTTGGACTCCAAATGCAATGTCAAAATTGCTGATTTTGGTTTGAGCAATATCATGCGTGATGGTCACTTTCTCAAGACAAGTTGCGGAAGCCCAAACTATGCTGCTCCAGAGGTTATATCTGGAAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTGATTTTATATGCTCTTCTCTGTGGTACCCTTCCTTTCGATGATGAAAACATTCCAAACCTTTTTAAGAAAATAAAGGGTGGGATTTATACTCTTCCTAGTCATCTGTCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTTGATCCTATGAAAAGAATGACCATACCTGAGATTCGCCAACACCCATGGTTCCAAGCTCACCTCCCTCGTTATTTAGCTGTGCCTCCACCAGATACAATGCAACAAGCCAAAAAGATTGATGAGGAACTTCTTCAGGAAGTGGTTAACATGGGATTTGATAGGAATCAACTGGTTGAATCTCTCCGGAACCGGATACAAAATGAGGGTACTGTAGCATACTATTTGTTATTGGACAATCGGTTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAATTCCAAGAGACAATGGATATTGGTTTTAACCGTATTCATCCTAGTGGAGTTACTGCTCCAGCTGTCGGTCACCGGCTTCCAGGTTTTATGGATTATCCAGGAGCAGCATTAAGATCCCAGATCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGTGCTCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTGTGTTGGAAAAAGATTGGACCTTACAACATGAAGTGCAGATGGGTTGCTGGCAATCCCGGTCATGACGGAATGGTAGACAATTCTTTGTATGGTAATCATTACTACGGAGATGATGCCACCATCATTGAGAACGATTCTGTTTCTAAGCCAAATGTGATCAAGTTTGAACTTCAGCTTTACAAAACTCGGGAGGAGAAATATCTGCTTGATCTGCAAAGGGTCCTGGGCCCACAGTTTCTGTTTTTGGATCTTTGTGCTGCTTTCCTTGCACAGCTTCGAGTCCTCTAA 1599 0.4265 MVSSLFNIGRFPSTSLVDLRMDGSTGRGSNADVILPNYKLGKTLGIGSFGKVKIAEHILTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVAHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEELLQEVVNMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMDIGFNRIHPSGVTAPAVGHRLPGFMDYPGAALRSQIPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGPYNMKCRWVAGNPGHDGMVDNSLYGNHYYGDDATIIENDSVSKPNVIKFELQLYKTREEKYLLDLQRVLGPQFLFLDLCAAFLAQLRVL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3468 532 CDD AMPKA_C 408 529 - -
Mibi02g3468 532 Pfam Protein kinase domain 38 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g3468 532 SMART serkin_6 38 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g3468 532 FunFam Non-specific serine/threonine protein kinase 414 530 - -
Mibi02g3468 532 SUPERFAMILY KA1-like 347 531 IPR028375 -
Mibi02g3468 532 Gene3D Kinase associated domain 1, KA1 414 530 - -
Mibi02g3468 532 Pfam UBA/TS-N domain 312 348 IPR015940 -
Mibi02g3468 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Mibi02g3468 532 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 311 351 IPR015940 -
Mibi02g3468 532 SUPERFAMILY UBA-like 300 349 IPR009060 GO:0005515
Mibi02g3468 532 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 483 531 IPR001772 -
Mibi02g3468 532 SUPERFAMILY Protein kinase-like (PK-like) 34 308 IPR011009 -
Mibi02g3468 532 ProSiteProfiles Protein kinase domain profile. 38 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g3468 532 FunFam Non-specific serine/threonine protein kinase 29 368 - -
Mibi02g3468 532 CDD UBA_SnRK1_plant 312 352 - -
Mibi02g3468 532 CDD STKc_AMPK_alpha 35 290 - -
Mibi02g3468 532 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Mibi02g3468 532 Gene3D Transferase(Phosphotransferase) domain 1 29 366 - -
Mibi02g3468 532 Pfam Kinase associated domain 1 489 531 IPR001772 -
Mibi02g3468 532 PANTHER SERINE/THREONINE KINASE 37 355 - -
Mibi02g3468 532 SMART uba_6 313 350 IPR015940 -
Mibi02g3468 532 FunFam Non-specific serine/threonine protein kinase 27 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3468 Mibi-ChrMibi02 61026417 61034046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3468 38 290 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 3.15e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Mibi02g3468 Pkinase 3.3e-80 CL0016