Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3458 ATGGCTGCCGCAAAACCCCAGAGGACTCCTCAAGAAGTTGAAGATATTATTCTCAGGAAGATTTTTCTTGTTTCTCTCACTGATTCCACGGGAAACGATCCTAGAATCGCTTACTTGGAATTGACAGCAGCTGAGATTCTCAGCGAAGGCCACGAATTGCGGCTTTCACGGGACTTGATGGAACGTGTTCTGATTGATCGGCTCTCTGGGAATTTTTCTTCACTCGAATCGCCTTTCCAGTACTTAATCGGCTGCTATCAACGAGCACACGATGAGGGCAAGAAGATTGCAAACATGAAGGATAAGACTTTGAGGGGTGAGATGGAATCCGTGGTGAAACAAGCTAGGAAATTGTGTGTTTCATATTGTAGGATTCATTTGGCCAATCCTGACATGTTTCAAAGTGCAAATTCAAATTCTAGTGCCGGTACACACCAGAACTCGCCATTGTTACCGCTTATTCTCTCTGAGGTTGGTGGCACCATTGATGGATTTGGTGGGAGTGGCAATGCCGGAGGAGTTAAGAGCCCTCCTGGGTTTGTGGAAGAGTTTTTTAGGGACTCAGACTTGGATAGTTTGGATCCAATATTGAACGGCTTGTACGAGGAGCTGAGGGGAAGTGTGATGAAAGTTTCAGCTCTTGGGAATTTCCAAGACTTTTTGAGGGCACTGCTGTTTTTGGTTAGATTTCCCGTTGGTGCAAAGTCTCTTGTAAGCCATCAGTGGTGGATTCCTAAAGGAGTTTACATGAATGGACGTGCAATTGAAATGACAAGCATTTTAGGCTGTTTCTTTCATGTTAGCGCTCTTCCTGATCATGCCTTTTTCAAGAGCCAGCCTGACGTTGGGCAGCAGTGCTTTTCAGATGCATCTACTCGCCGTCCATCTGATTTGTTATCTTCATTCACCACGATTAAAACCGTCATGAATAACTTGTGTGATGGCCTGAGTGAGGTCCTCCTCATTCTTCTGAAAAGTACAGATACTCGTGAAAATGTACTTGAGTATCTTGCTGAGGTAATCAATAAAAACGCATCCAGGGCTCATATACAGGTTGATCCTATGACTTCTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTTATGCTTCGTCTCTGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAGATTGATGCAAAATATGTCTACTATTCAAACCGTCTGGAATTAAGAGGGTTGACTGCCCTTCATGCATCTTCTGAGGAAGTTGCTGAATGGATAAAGAGTAATGATGGTGAGAAACGTTTGCAACAATCTCAGGAAGCAACCAGTTCTGGTAGTAACAATGCCGGTGATCCTACAAGTTCAAAGCCTGCATCACATGCTGAAAAGACAAAATACCCATTTATTTGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTAGGCCTCTTAAAAGCACTTTCTGACTTCAAACACTTAGCTCAGGATCTTTCTAGGTGTGAAGATTCTCTTTCAACCCTCAAAGAAATGCAGGCACAGTCATCCTCGCCTCAGTTGGAATTAGATATAGCTCGACTTGAGAAACAAATAGAGGAGTACTCACAGCAAAAGCTTTGTTATGAAGCTCAGATATTGCGGGATAACACATTTATTCAAAATGCTCTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGCTGGCATGGTTGGGGGTTTCAAGATGCCTCTACCATCCACTTGCCCAATGGAATTTGCTTCGATGCCAGAGCATTTTGTAGAAGATGCAATGGAATTGCTCATATTTGCCTCTCGGATTCCAAAAGCCTTAGATGGCGTTGTGCTGGATGAATTCATGAACTTTATAATTATGTTCATGGCCAGTCCTGAATTCATCAAAAACCCATATTTGAGAGCAAAGATGGTTGAAGTCTTGAATTGCTGGATGCCCCGTAGGAGTGGCTCATCTGCTACATCCACTTTATTTGAAGGGCATCAGCTCTCTCTTGAGTATCTTGTGAGGAATCTTTTGAAGCTTTACGTTGATATTGAGTTTACTGGTTCTCATACTCAGTTTTATGACAAGTTTAACATCCGCCATAATATTGCTGAACTTCTAGAATACCTGTGGCAGGTCCCTAGTCATCGTAATGCCTGGAGACAGATTGCTAAAGAAGAGGAAAAGGGCGTCTATCTAAATTTCTTAAACTTTCTGATCAATGATAGTATATATCTTCTGGATGAAAGTTTGAACAAAATTCTTGAGCTAAAAGAATTGGAAGCTGAGATGTCAAATACCACTGAATGGGAGCGACGGCCAGCTCAAGAAAGGCAGGAGAGGACACAGCTATTCCACTCGCAAGAAAATATTATTCGAATAGATATGAAGTTGGCAAATGAAGATGTTAGTATGCTCGCATTTACTTCCGAGCAGATTACAGCTCCTTTCCTCCTTCCTGAGATGGTTGAAAGAGTAGCCAGCATGCTCAATTACTTTCTTCTGCAACTGGTGGGTCCCCAAAGAAAATCACTTAGTCTGAAAGATCCTGAAAAGTATGAATTCCGTCCCAAGCATTTGCTTAAGCAGATTGTGCACATTTATGTTCATCTAGCCAGAGGTGATACCAACAACATCTTCCCATCTGCAATTTCCAAGGATGGTCGATCATACAATGATCAGCTGTTTAGTGCTGCAGCAGATGTTCTTCGGAGAATAGGCGAGGATGGAAGAGTTATACATGAATTTATTGAACTCGGTGCTAAAGCAAAAGTGGCTGCTACGGAGGCCATGGATGCTGAAGCTGCTTTAGGGGAAATACCAGATGAATTCCTGGATCCAATTCAGTACACCCTGATGAAGGATCCAGTTATTTTACCTTCTTCAAGGATCACAGTTGACCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCATTCAATCGTTCTCATCTCACTGCCGATATGCTGATTCCTGATGATGAACTCAGGGCAAAAATTGAGGAGTTTGTGAGGTACCAGGAACTGAAGAAGCATGATAAAGGCCAAAATATTCAGAGTAGTAAGGCCACAATTCAGGCCACGCATGAGGATATGTTGATTGATTAG 3090 0.4246 MAAAKPQRTPQEVEDIILRKIFLVSLTDSTGNDPRIAYLELTAAEILSEGHELRLSRDLMERVLIDRLSGNFSSLESPFQYLIGCYQRAHDEGKKIANMKDKTLRGEMESVVKQARKLCVSYCRIHLANPDMFQSANSNSSAGTHQNSPLLPLILSEVGGTIDGFGGSGNAGGVKSPPGFVEEFFRDSDLDSLDPILNGLYEELRGSVMKVSALGNFQDFLRALLFLVRFPVGAKSLVSHQWWIPKGVYMNGRAIEMTSILGCFFHVSALPDHAFFKSQPDVGQQCFSDASTRRPSDLLSSFTTIKTVMNNLCDGLSEVLLILLKSTDTRENVLEYLAEVINKNASRAHIQVDPMTSASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVYYSNRLELRGLTALHASSEEVAEWIKSNDGEKRLQQSQEATSSGSNNAGDPTSSKPASHAEKTKYPFICECFFMTARVLNLGLLKALSDFKHLAQDLSRCEDSLSTLKEMQAQSSSPQLELDIARLEKQIEEYSQQKLCYEAQILRDNTFIQNALSFYRLMIVWLAGMVGGFKMPLPSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTTEWERRPAQERQERTQLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNNIFPSAISKDGRSYNDQLFSAAADVLRRIGEDGRVIHEFIELGAKAKVAATEAMDAEAALGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDDELRAKIEEFVRYQELKKHDKGQNIQSSKATIQATHEDMLID 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3458 1029 Pfam Ubiquitin elongating factor core 261 914 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Mibi02g3458 1029 MobiDBLite consensus disorder prediction 422 452 - -
Mibi02g3458 1029 ProSiteProfiles U-box domain profile. 930 1004 IPR003613 GO:0004842|GO:0016567
Mibi02g3458 1029 Coils Coil 509 536 - -
Mibi02g3458 1029 SUPERFAMILY RING/U-box 923 999 - -
Mibi02g3458 1029 CDD RING-Ubox_UBE4A 933 998 - -
Mibi02g3458 1029 FunFam Ubiquitin conjugation factor e4 a 930 1008 - -
Mibi02g3458 1029 MobiDBLite consensus disorder prediction 427 452 - -
Mibi02g3458 1029 PANTHER UBIQUITINATION FACTOR E4 5 1007 IPR045132 GO:0000151|GO:0030433|GO:0034450
Mibi02g3458 1029 SMART Ubox_2 934 997 IPR003613 GO:0004842|GO:0016567
Mibi02g3458 1029 Pfam U-box domain 931 1000 IPR003613 GO:0004842|GO:0016567
Mibi02g3458 1029 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 930 1010 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3458 1 1029 U-box Gene Family AT5G15400 75.619 0.0 1620