Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3334 ATGGATGTTCTATCAATTTCGTCGCCTTCTTTAAATGAACCCATAGCCTTTTCCATTGTCAAACCTCAAAGATTCCAACTTTGCCACCTTCCCTTAAACCCCAGATTCCTCAATTCATCAAATAACAAAACCCATTTCAAGCTTTCTTCTTCTTCTTCTTCTTCCTGTTTCTGTTCAAGAGTAGCGGCAACTTCTGCAACTACTTACACTCCCTTAGCTTCTTCATCCACTGAGAATCGCCATTGGATGGTAATAATGGAGAAGCCTCCGCTTGGGGTTGTTTCCAAGCAGCGAGTTATTGATTATTATGTTCAAACTCTGCAAAGGGTCATTGGCAGTGAGGAAGAGGCTCAAATGTGTATATACGATGCTTCGTGGGATACTCATTATGGTTTTTGTTGTGACATCGATGAAGAAACTTCTTCCCAGCTCGCTCGTTTACCTGGGGTCATTTCGGTTAAGCCTGATTCAGATTTCAGCTCTCCGGAAAAGGACTATAGGTCATCAAATGGGCAGGCAGATAATTTGTCAAAGCTACAAATTGGAGCCACTTTGTTGTTCCCTGCTGGGAATTCAAAGCATTGGCTTGTTCGAATGGATAAACCTGGGGTCGGGATTGTTACAAAGGCCCAAGTCGTGGATTTTTATGCTCAAATTCTAACCAAAGTCATGGGAAATGAAAAGGATGCACAAATGTGTATATACCATGTTTCTTGGAAAAACAACTTTGGCTTTTGTTGTGAACTTGATGAGGATTGTGCACTAGAGCTTGCTGGCGTCCCTGGTGTCTTGTCAGTTCAGCCAGATAATAATTTTGAGTTGGAAATTAAGGATTATGCAGGTGTGAACCTGGGAAACAGTTTGAGTGTGCTGAACTCTTCTGAAGCAAGCGAGGCAACTCCTCTGAAAACAAAAAAACTTTTTGTGACAGGCCTATCATTTTATACATCTGAGAAAACCTTACGTGCTGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGACAAAATTTCTAAAAGGTCCAAGGGTTATGCATTTGTGGAATACACAACAGAGGAGGCTGCAGCTGCGGCATTGAAAGAAATGAATGGCAAGATTATCAATGGCTGGATGATAGTTGTGGATGTTGCCAAGCCTAGCCCACCGAAATCTAACAGGGGTCGTGCTAGACCTGCAGCCTGA 1194 0.4221 MDVLSISSPSLNEPIAFSIVKPQRFQLCHLPLNPRFLNSSNNKTHFKLSSSSSSSCFCSRVAATSATTYTPLASSSTENRHWMVIMEKPPLGVVSKQRVIDYYVQTLQRVIGSEEEAQMCIYDASWDTHYGFCCDIDEETSSQLARLPGVISVKPDSDFSSPEKDYRSSNGQADNLSKLQIGATLLFPAGNSKHWLVRMDKPGVGIVTKAQVVDFYAQILTKVMGNEKDAQMCIYHVSWKNNFGFCCELDEDCALELAGVPGVLSVQPDNNFELEIKDYAGVNLGNSLSVLNSSEASEATPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAAAAALKEMNGKIINGWMIVVDVAKPSPPKSNRGRARPAA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3334 397 Gene3D - 289 397 IPR012677 -
Mibi02g3334 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 383 IPR000504 GO:0003723
Mibi02g3334 397 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 184 374 IPR039206 GO:0016554
Mibi02g3334 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 373 IPR000504 GO:0003723
Mibi02g3334 397 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 62 160 IPR037045 -
Mibi02g3334 397 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 188 275 IPR037045 -
Mibi02g3334 397 FunFam Organelle RRM domain-containing protein 1, chloroplastic 183 272 - -
Mibi02g3334 397 SUPERFAMILY RNA-binding domain, RBD 295 394 IPR035979 GO:0003676
Mibi02g3334 397 SMART rrm1_1 306 379 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3334 Mibi-ChrMibi02 59070178 59072955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3334 302 390 C2H2 Transcription Factor Family AT2G19380 34.831 2.01e-12 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g3334 02 59070178 59072955 Mibi02g3334 02 59070178 59072955 ECH