Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3333 ATGAATGCATTGGAATACCTAAAGACCCATTTGAAGTATGAGAGGAATCCCAGGATTAAGGAAATAATAAATGAGAAGTTTGTTCAATACTTGAGGAGGGCAGAGGAGATACGTGAGATTCTTGATAAAGGGGAAAGTGGGCCTAAGCCTAAATTGTCTGGTGGTGCAGCTCAATCTGATGCTGTGAGGCCAAATGCAAAGACAAAGGGTGGAGAAGCTAGAGATAAGGATGATCCAGAGAAAGCAAAGCTGATGGCTGGTCTTGATTCTGTAATAATCAGAGAGAAGCCTAATGTTAAATGGAGTGATGTTGCTGGGCTTGAGAGTGCCAAACAGGCATTGCAAGAGGCTGTGATATTGCCTGTTAAGTTCCCTCAATTTTTTACAGGGAAGAGAGAACCGTGGAGAGCATTTCTATTGTACGGTCCCCCTGGAACAGGGAAATCATATTTAGCAAAGGCTGTAGCTACCGAGGCAGACTCAACATTCTTCAGTGTTTCATCCTCAGATCTAGTTTCTAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCCAGCCTTTTCCAAATGGCTCGTGAAAGTGCTCCTTCAATTATCTTCATTGATGAAATAGATTCTTTATGCGGCCAACGAGGTGAAGGCAATGAAAGTGAAGCATCTAGACGCATCAAAACTGAACTTCTTGTACAAATGCAGGGCGTGGGTAAAGATGATAATAAAGTTCTCATTCTTGCAGCCACCAATACACCTTATGCTCTGGATCAGGCCATCCGACGACGTTTTGACAAGCGAATATACATACCTCTACCAGACATGAAGGCCAGGCAACATATGTTTAAGGTGCATCTTGGAGACACCCCACATAATTTAACTGAAAAAGATTTTGAGGAATTGGCGCGCAATACTGATGGATTTTCTGGTTCAGACATTTCTGTTTGTGTTAAGGATGTACTTTTTGAACCCGTTCGTAAAACCAGGGATTCCAAATTCTTTAGGAAATCCTCTAAGGGAATGTGGATCCCTTGCGAGCCTACTGAAAAGGGCGCTGTTAACATTAGCCTGCAAGAACTTGATGCCCAAGGCCTTGCTTCAGAGATTGTGCCACCACCGATATCAAGAGAAGATTTTGATAAAGTGTTAAGAAGGCAGAAGCCAACGGTAAGTAAAGCAGATCTTGAGGTGCATGAGAGATTTACCCAGGAGTTTGGAGAGGAGGGTTGA 1218 0.4302 MNALEYLKTHLKYERNPRIKEIINEKFVQYLRRAEEIREILDKGESGPKPKLSGGAAQSDAVRPNAKTKGGEARDKDDPEKAKLMAGLDSVIIREKPNVKWSDVAGLESAKQALQEAVILPVKFPQFFTGKREPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGKDDNKVLILAATNTPYALDQAIRRRFDKRIYIPLPDMKARQHMFKVHLGDTPHNLTEKDFEELARNTDGFSGSDISVCVKDVLFEPVRKTRDSKFFRKSSKGMWIPCEPTEKGAVNISLQELDAQGLASEIVPPPISREDFDKVLRRQKPTVSKADLEVHERFTQEFGEEG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3333 405 CDD AAA 105 268 - -
Mibi02g3333 405 Pfam Vps4 C terminal oligomerisation domain 338 402 IPR015415 -
Mibi02g3333 405 FunFam Vacuolar protein sorting-associated protein 4 97 277 - -
Mibi02g3333 405 ProSitePatterns AAA-protein family signature. 240 259 IPR003960 GO:0005524|GO:0016887
Mibi02g3333 405 Gene3D - 1 43 - -
Mibi02g3333 405 SUPERFAMILY MIT domain 1 57 IPR036181 -
Mibi02g3333 405 SMART AAA_5 134 270 IPR003593 -
Mibi02g3333 405 Gene3D - 270 385 - -
Mibi02g3333 405 FunFam vacuolar protein sorting-associated protein 4A 270 385 - -
Mibi02g3333 405 PANTHER AAA DOMAIN-CONTAINING 2 403 - -
Mibi02g3333 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 400 IPR027417 -
Mibi02g3333 405 Gene3D - 97 393 IPR027417 -
Mibi02g3333 405 MobiDBLite consensus disorder prediction 42 80 - -
Mibi02g3333 405 Pfam ATPase family associated with various cellular activities (AAA) 139 268 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3333 Mibi-ChrMibi02 59063800 59067398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3333 134 342 Calmodulin-binding Proteins AT3G56690 35.545 1.37e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g3333 02 59063800 59067398 Mibi02g3333 02 59063800 59067398 ECH