Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3311 ATGGAAATGAATGGTGATGATTTATCATCTGATAGCAGCTATAATCGACCAATGAATGTGGTTGATGAGTTTGATCACTTGAATGGACAAGCATCTTTCAAGAGTTGGGCTAAGCAAACTGAGGAGAGCTATCAGTTGCAGCAGGCTTTGGCACTTCGTCTTTCTTCTCAGGCTGCTTCTGCTGATGATCCCAATTTCTTGGACTTAGAATCCAGCTCTTCCAACAATTCAGCTGAGGCAGTGTCTCATCGATTTTGGGTCAATGGTTGCTTGCAATACTCTGACAAAATTCCAGATGGGTTTTATCTTATCCATGGGATGGATGCGTATTCATGGACTATAAGTGCTGATCTGCAGAATTTTGGCCTGATTCCATCATTTGAATCACTGATGTCAGTTGAACCATGTGATGATTTATCAGTTGTAGTGGTTGCAATTGACAAATCAAGAGATCCTGGTTTGAGAGAACTGCTAAATGGCATAGTTACTCTTTCCAATAACCGGATTGCTAAAAAGGAAGTAATCAATCATCTTGCAAATCTTGTTTGCAGTAGGTTGGGGGGTGAAACCTGGACTGAAGAAAACTTAGCTCCGCACTGGAAGGAATGCACTCAAATTCTTAAAGACATCCTTCATTCTGTCATTCTTCCAATTGGAAGCTTAACCGTTGGCTTATGTGTCCACCGAGCATTGCTCTTTAAAGCATTAGCTGACTCAGTGAACCTCCCATGCCGAATTGTCAAGGGCTGCAAGTATTGTAAAAAGGATGTAGGTGCCTCATGTTTGGTGCAAATTGGCCCTGACAGGGAGTGTTTGATTGATTTGGTTGGAAGGCCAGGGGCTATGAGCCAGCCTGATTCTTCACTGAATTCTTCATCTTCATTATCAATTGCTTCACCACTATGTCACCCAAAGTTCAAGCCTGTTGAAACTGCTGAATATTCAAAGACGTTAGCTCAATTATACTTTTTAGATTGTCAAGGCCTGCAACTTGTATTTGACTCCAAGTCAGGTGGTACAATTGATCGTAAGGATGGAATTGATCGAAAGCCTACTGAAGCTTTTAATGCAAACTATGCAGAAGAAAATGCGTTATTCAAAAAAGCAAACCAATCATCATTGGATGGGCCAAGTCACAGGGTTGATCTTGATGAGGATGATCTGGAAATTTTATGGAGTGAACTTATTTTGAAAGATAAAATTGGAACAGGTTCATTTGGAACTGTGCTTCGTGCAGATTGGCGTGGTTGTGATGTTGCTGTGAAAATTCTCAAGGTTCAAGGTTTTGATGCAGAACGATATGAAGAATTTAGAAAGGAGGTGTCACTCATGAAACGTCTACGGCATCCAAACATAGTTCTCTTCATGGGTGCAGTTTTTGAACAACCCAACTTGTCAATAGTGACTGAATATTTATCAAGAGGAAGTTTGTTTGAACTTCTGCGCATGCCAGATGCTAGGTTAGTTCTCAGTGGGAAGCATCGGTTAAGTATGGCTTACGATGTGGCTAGCGGAATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCATAGGGATCTTAAGTCTCCTAATCTTTTGGTGGACGATACTTATACAGTCAAGGTATGTGATTTTGGTCTCTCACGTACCAAGGCAAATACATTTCTTTCATCTAAAACAGCTGCAGGGACTCCAGAGTGGATGGCACCAGAAGTCATTCGTGGTGAATTATCCAATGAAAAAGCTGACATATTCAGCTTTGGTGTAATCCTGTGGGAACTAGTGACCGTGCAACAACCTTGGAGAAATTTAAATCCATCTCAGGTTGTTGCAGCTGTCGGTTTCATGGACAAAAGACTAGAGATTCCAAGCTATGTGAATCCTGAAGTGGCTGCCTTGATTCAACTCTGCTGGGCCGTTGAACCCTCGAGCCGCCCATCTTTCTCCTATATTATGAATTGTCTGCAGAAAATGATTGCCGATACTCGAGGGTGA 1977 0.4168 MEMNGDDLSSDSSYNRPMNVVDEFDHLNGQASFKSWAKQTEESYQLQQALALRLSSQAASADDPNFLDLESSSSNNSAEAVSHRFWVNGCLQYSDKIPDGFYLIHGMDAYSWTISADLQNFGLIPSFESLMSVEPCDDLSVVVVAIDKSRDPGLRELLNGIVTLSNNRIAKKEVINHLANLVCSRLGGETWTEENLAPHWKECTQILKDILHSVILPIGSLTVGLCVHRALLFKALADSVNLPCRIVKGCKYCKKDVGASCLVQIGPDRECLIDLVGRPGAMSQPDSSLNSSSSLSIASPLCHPKFKPVETAEYSKTLAQLYFLDCQGLQLVFDSKSGGTIDRKDGIDRKPTEAFNANYAEENALFKKANQSSLDGPSHRVDLDEDDLEILWSELILKDKIGTGSFGTVLRADWRGCDVAVKILKVQGFDAERYEEFRKEVSLMKRLRHPNIVLFMGAVFEQPNLSIVTEYLSRGSLFELLRMPDARLVLSGKHRLSMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDTYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKADIFSFGVILWELVTVQQPWRNLNPSQVVAAVGFMDKRLEIPSYVNPEVAALIQLCWAVEPSSRPSFSYIMNCLQKMIADTRG 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3311 658 CDD STKc_MAP3K-like 401 647 - -
Mibi02g3311 658 SMART serkin_6 395 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g3311 658 Gene3D Phosphorylase Kinase; domain 1 388 473 - -
Mibi02g3311 658 PRINTS Tyrosine kinase catalytic domain signature 510 528 IPR001245 GO:0004672|GO:0006468
Mibi02g3311 658 PRINTS Tyrosine kinase catalytic domain signature 576 598 IPR001245 GO:0004672|GO:0006468
Mibi02g3311 658 PRINTS Tyrosine kinase catalytic domain signature 620 642 IPR001245 GO:0004672|GO:0006468
Mibi02g3311 658 PRINTS Tyrosine kinase catalytic domain signature 469 482 IPR001245 GO:0004672|GO:0006468
Mibi02g3311 658 PRINTS Tyrosine kinase catalytic domain signature 557 567 IPR001245 GO:0004672|GO:0006468
Mibi02g3311 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Mibi02g3311 658 Pfam Ethylene-responsive protein kinase Le-CTR1 78 282 - -
Mibi02g3311 658 ProSitePatterns Protein kinases ATP-binding region signature. 401 422 IPR017441 GO:0005524
Mibi02g3311 658 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 64 650 - -
Mibi02g3311 658 Gene3D Transferase(Phosphotransferase) domain 1 474 657 - -
Mibi02g3311 658 FunFam PAS domain-containing protein tyrosine kinase family protein 473 657 - -
Mibi02g3311 658 SUPERFAMILY Protein kinase-like (PK-like) 380 649 IPR011009 -
Mibi02g3311 658 FunFam Serine/threonine-protein kinase isoform 1 385 473 - -
Mibi02g3311 658 ProSiteProfiles Protein kinase domain profile. 395 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g3311 658 Pfam Protein tyrosine and serine/threonine kinase 396 649 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3311 Mibi-ChrMibi02 58803784 58812270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3311 36 653 MAP Kinase Kinase Kinase AT5G03730 58.104 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Mibi02g3311 PK_Tyr_Ser-Thr 1.2e-67 CL0016