Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3269 ATGTCTCTGTCCCAATCTGCCATGGAAACACCAGAAGAAGTGGTAATCTCTTTGGGGGTTAAAGACCAAACCCAAAATCAGATTGTCAAAGGAAAAAGAACCAAAAGGGTGAGGCCACAATCTCCATTGCCCACCTCCAAAACCGAAGAATATCAATTTCTAGGTGAAGATATCAATAATGCCAAGAACTCTGCCACCACCCCAACTTCTTCTGAAGAATTTGAAGAAAACAACAACATCAATAACATTTACAGCAGCAGCAGCACAGAGGAAGAGGAGGATATGGCCAATTGCTTGATCCTTCTGGCTCAAGGCCAATCTCAGAATTCTCCGAAACCCGCCGGGGAAGAAGGTAACATGACGATGACAATGATGACGACGATGAAGCCTAACTACAACAACAATTATAACTATAATAGCAGCAGTAGTAGGAGATTCATGGAAGCATCCACCATGGGAGCTAACAAAGCAGGTTTTTATGTCTATGAATGTAAGACTTGTAATAAAACCTTCCCTTCTTTCCAAGCTCTAGGAGGACACAGAGCAAGCCATAAGAAGCCTAAGAGTTCAACTCCAATGGCAGCCATTCTAGAAAAAGAGAAGAAGAAAGAACAAGACTTTATGCTACGCAAGAACAATAATGTTATTAATCATACCCCACTTTCTTTCCAGTTTCTGAGCAGTGGTAGCAGCAGCAATAATCTGAATACTAAGAATAAGATTCATGAGTGTTCTATTTGTGGGGCTGAGTTTGCTTCAGGTCAGGCTTTAGGTGGCCACATGAGAAGGCATAGGGCACCCAATGCCTCGATCGTGACGGCTAGCAATGCGAATTCTTTGCCATTGTTGGCGCTTAACAATAATCCAGTTATGGGTTTGGAAGCAGATCATCAATATCCCAAGGAAGATCTTCACCATCAACCAAGAAAGAAAAGGAATGCTTTGTCTTTGGATTTAGATCTTAATCTTCCTGCCCCAGAAGATGATCATCAGAGTGATTCATCTTCTTTTCCTTTTGAACCCAAGAAGCAGAAACAGCAGCAACATCAACAAGCAAGTTTGGTTTTTTCTTCTGCACCTGCTATGGTGGATTGTCATTACTGA 1104 0.4194 MSLSQSAMETPEEVVISLGVKDQTQNQIVKGKRTKRVRPQSPLPTSKTEEYQFLGEDINNAKNSATTPTSSEEFEENNNINNIYSSSSTEEEEDMANCLILLAQGQSQNSPKPAGEEGNMTMTMMTTMKPNYNNNYNYNSSSSRRFMEASTMGANKAGFYVYECKTCNKTFPSFQALGGHRASHKKPKSSTPMAAILEKEKKKEQDFMLRKNNNVINHTPLSFQFLSSGSSSNNLNTKNKIHECSICGAEFASGQALGGHMRRHRAPNASIVTASNANSLPLLALNNNPVMGLEADHQYPKEDLHHQPRKKRNALSLDLDLNLPAPEDDHQSDSSSFPFEPKKQKQQQHQQASLVFSSAPAMVDCHY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3269 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
Mibi02g3269 367 SMART c2h2final6 162 184 IPR013087 -
Mibi02g3269 367 SMART c2h2final6 242 264 IPR013087 -
Mibi02g3269 367 PANTHER ZINC FINGER PROTEIN ZAT5 81 346 - -
Mibi02g3269 367 MobiDBLite consensus disorder prediction 321 355 - -
Mibi02g3269 367 SUPERFAMILY beta-beta-alpha zinc fingers 161 264 IPR036236 -
Mibi02g3269 367 MobiDBLite consensus disorder prediction 26 49 - -
Mibi02g3269 367 Pfam C2H2-type zinc finger 242 267 - -
Mibi02g3269 367 Pfam C2H2-type zinc finger 161 187 - -
Mibi02g3269 367 Gene3D Classic Zinc Finger 139 218 - -
Mibi02g3269 367 Gene3D Classic Zinc Finger 219 279 - -
Mibi02g3269 367 MobiDBLite consensus disorder prediction 328 355 - -
Mibi02g3269 367 ProSitePatterns Zinc finger C2H2 type domain signature. 244 264 IPR013087 -
Mibi02g3269 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 269 IPR013087 -
Mibi02g3269 367 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3269 Mibi-ChrMibi02 58168498 58169601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3269 25 367 C2H2 Transcription Factor Family AT5G04390 40.722 2.01e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi02g3269 zf-C2H2_6 2.3e-12 CL0361