Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3264 ATGCTTCCTCCTGTTACCTGCATTCCCTTCTTCCTATGTATCTTACTAAGTTCTTTACCTCCTTCCATTAAAGCTTCCTTCAACCTCTCCTTGCCCCACCAGCATCCTTACCCAGAAGCTGTTGTTCATGAAGTTCACAGGAGAGTCAATGAATCCCTTCTCCGGCGACAACTCCTGGCAGGAGCAGGAAAAGACCTCAGCAACGGCTGCCTCACAGGAAACCCAGTGGACGATTGTTGGAGATGCGACCCAAACTGGGCATCAAATCGGCAAAAGCTAGCAGATTGCGGAATAGGGTTTGGCGGAGACGCCATGGGAGGGAAAGGAGGGCAGATCTACGTAGTCACCGACTCATCGGACAACGACCCTGCCAATCCAACACCAGGAACACTCCGATTCGGAGTCATTCAAGATGAACCCCTCTGGATTGTCTTCTCCACTTCCATGACCATAACCCTAAAACACGAACTCATCTTCAACAGCTTCAAAACCATCGATGGAAGAGGCGCTAACGTCCAGATCACAGGCCATGGTTGTATCACCATCCAATATGTATCCAACATCATCATCCACAACATCCACATCCACCATTGTAAACCCTCAGGCAACACAAACATCCGATCAAGCCCAACCCATGTTGGATTTAGGGGCAAATCAGACGGAGATGGGATCTCAATATACTCATCGCGCAAAATCTGGATTGACCATTGTTCATTGTCATATTGTACGGACGGATTGGTGGATGCTATAATGGGATCGACGGGGATAAGCATAACGAATAGTCATTTTGGGCATCATGATGAGGTGATGCTTTTGGGGCATAATGATAAGTATTTGCCTGATAAGGGGATGCAGGTGACGATTGCGTTTAACCATTTTGGAGAAGGGTTGGTGCAGAGGATGCCAAGGTGTAGGTTGGGCTATATACATGTTGTGAACAATGATTTTACACAGTGGGAGATGTATGCTATTGGTGGTAGTGCTAATCCCACCATTAACAGTCAGGGGAATCGTTATACTGCTCCTCCCAGTCCTGATGCCAAAGAGGTGACAAAGAGGGTGGACACAGAGGAGGGGGAGTGGGCTGATTGGAACTGGAGGACGGAGGGTGACATAATGGTCAATGGTGCATTCTTCGTCCCCTCCGGTGCCGGCTTGACCTCTCAGTATGCCCGTGCCTCTAGCGTCGACCCCAAGTCCGCCGTCCTCATCGACCAGCTCACCCAATTCGCCGGTGTCTTTGGCGATCCTAGGGATAATGGAGATCTGTTTCCCGGATTCAGCGGCGGTGGGACCGTGACCGGAGCCAGCAGCACCGGCAATGCGGGGTCCACCGGCGGCGACAATGGGGACTTCTTTGGAATGATATTCAAGGGTAGTAGCAGCCAAGCAGCACCACCCTCTCTCTCCATTGTTTCCATCTTTTTGTCTCTTCTCATTATTTCCATTTTGTACACTTTCACCAACCATTATTCCCTCATGTTCTCTTCGATACTTTGA 1500 0.4967 MLPPVTCIPFFLCILLSSLPPSIKASFNLSLPHQHPYPEAVVHEVHRRVNESLLRRQLLAGAGKDLSNGCLTGNPVDDCWRCDPNWASNRQKLADCGIGFGGDAMGGKGGQIYVVTDSSDNDPANPTPGTLRFGVIQDEPLWIVFSTSMTITLKHELIFNSFKTIDGRGANVQITGHGCITIQYVSNIIIHNIHIHHCKPSGNTNIRSSPTHVGFRGKSDGDGISIYSSRKIWIDHCSLSYCTDGLVDAIMGSTGISITNSHFGHHDEVMLLGHNDKYLPDKGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPPSPDAKEVTKRVDTEEGEWADWNWRTEGDIMVNGAFFVPSGAGLTSQYARASSVDPKSAVLIDQLTQFAGVFGDPRDNGDLFPGFSGGGTVTGASSTGNAGSTGGDNGDFFGMIFKGSSSQAAPPSLSIVSIFLSLLIISILYTFTNHYSLMFSSIL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3264 499 SUPERFAMILY Pectin lyase-like 69 413 IPR011050 -
Mibi02g3264 499 Pfam Pectate lyase 156 337 IPR002022 -
Mibi02g3264 499 Gene3D - 73 415 IPR012334 -
Mibi02g3264 499 PRINTS Pollen allergen Amb family signature 364 388 IPR018082 -
Mibi02g3264 499 PRINTS Pollen allergen Amb family signature 393 416 IPR018082 -
Mibi02g3264 499 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Mibi02g3264 499 PRINTS Pollen allergen Amb family signature 220 241 IPR018082 -
Mibi02g3264 499 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Mibi02g3264 499 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Mibi02g3264 499 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Mibi02g3264 499 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Mibi02g3264 499 FunFam Pectate lyase 73 415 - -
Mibi02g3264 499 SMART amb_all 148 345 IPR002022 -
Mibi02g3264 499 PANTHER PECTATE LYASE 18-RELATED 34 414 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3264 Mibi-ChrMibi02 58087351 58094419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3264 22 420 Polysaccharide Lyase AT3G54920 67.482 0.0 581